Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_N15
(416 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 30 0.65
05_04_0311 - 20120172-20122115 29 1.5
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 29 2.0
02_05_0441 + 29040250-29040524,29040656-29040772,29040834-290411... 28 3.5
01_03_0264 - 14419381-14419431,14419807-14419875,14420771-144208... 27 4.6
01_01_0566 - 4166511-4166632,4167302-4167375,4167509-4167648,416... 27 4.6
>10_08_0959 -
21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 30.3 bits (65), Expect = 0.65
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = -2
Query: 412 WVFCGCLAEAFVSRLPRVWCLHINLNSIFRLLKLTIFNDELLKDIFLRVRSGSGFVDS 239
W CL+ ++ P +WC+ N+ L + + E L + L VR +GF+ S
Sbjct: 104 WTIYFCLSLTVMAWKPGMWCMAKNMQGDVELTNMQL-KPEALNSLKLPVRVKAGFLGS 160
>05_04_0311 - 20120172-20122115
Length = 647
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 210 LSISAQAQPKLSTKPEPERTRRKISLRSSSLNI 308
LS+S P+L +K + ER R + LRSSSL++
Sbjct: 529 LSVSTDYFPQLKSKCKLERLRTLLVLRSSSLSL 561
>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 213 SISAQAQPKLSTKPEPERTRRKISLRSSSLNIVNFNKRNIELRF 344
++ + A+P K P++T + LR L ++N K++I+LRF
Sbjct: 1079 TLPSSAKPATKQKVAPKKTDVRAILRP--LTVINCQKKDIQLRF 1120
>02_05_0441 +
29040250-29040524,29040656-29040772,29040834-29041143,
29041863-29042018,29042332-29042483,29042783-29042936,
29043897-29043998,29044168-29044209
Length = 435
Score = 27.9 bits (59), Expect = 3.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 143 IAGPALIMPFLMLRPIFSIFLKTFHFGS 226
I GPA++ ++ L+P+ S L F GS
Sbjct: 304 ILGPAMVSLYMPLQPVVSALLSKFFLGS 331
>01_03_0264 -
14419381-14419431,14419807-14419875,14420771-14420817,
14421340-14422474
Length = 433
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 161 IMPFLMLRPIFSIFLKTFHFGSGAAETVDKA 253
I P L LRP +IFL F SG +T+ ++
Sbjct: 202 IPPELFLRPYDAIFLNNNRFTSGIPDTIGRS 232
>01_01_0566 -
4166511-4166632,4167302-4167375,4167509-4167648,
4167731-4167802,4167915-4167984,4168112-4168185,
4168316-4168487,4168887-4168976,4169151-4169175,
4169273-4169432,4169855-4170265,4170443-4170559
Length = 508
Score = 27.5 bits (58), Expect = 4.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 161 IMPFLMLRPIFSIFLKTFHFGSGA 232
++PF + P+ ++ K HFG+GA
Sbjct: 216 VVPFFLPSPLIQLYGKIAHFGAGA 239
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,019,095
Number of Sequences: 37544
Number of extensions: 130551
Number of successful extensions: 378
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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