Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_N12
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    27   0.84 
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   0.84 
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   5.9  

>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 19/88 (21%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
 Frame = +2

Query: 137  SRVRRQAGELTINSDGTSGAMVKVPITGNEHHKLSALGSVDLTNQIKLGAATAGLVYD-- 310
            S + +++G++ +  +GT G    +   G    K S    +++ + + + AA   ++ +  
Sbjct: 1228 SVINQESGKIELFMEGT-GLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEAARYSIISEIG 1286

Query: 311  -NVNRHGATLTNTHIPGIGDKLSVAGKV 391
              + +HG T+   HI  +GD ++  G+V
Sbjct: 1287 YTMAKHGLTVDPRHIMLLGDVMTCKGEV 1314


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +2

Query: 179 DGTSGAMVKVPITGNEHHKLSALGSVDLTNQIKLGAATAGLVYDNVNRHGATLTNTHIPG 358
           D +SGA++ V  T     +    GS+  T+ I     T+G V + V     T+T T I G
Sbjct: 792 DTSSGAVIVVEPTAGTVTETIVSGSIPFTSTIPAQGTTSGTV-EVVEPTAGTVTETIISG 850


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 317 NRHGATLTNTHIP-GIGDKLSVAGKVNL 397
           N+   T T+T    G GDK S AGK N+
Sbjct: 252 NKESTTATSTLTDAGFGDKSSTAGKHNV 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,479,170
Number of Sequences: 5004
Number of extensions: 24779
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)