Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_N12
         (404 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    31   0.31 
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    27   6.8  
U21318-1|AAC46669.1|  457|Caenorhabditis elegans Hypothetical pr...    27   6.8  

>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 31.1 bits (67), Expect = 0.31
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 227  HHKLSALGSVDLTNQIKLGAATAGLVYDNVNRHGATLTNTHIPGIGD 367
            H +   +G VDL+    LG A    + DNV+ HG  L +   P +GD
Sbjct: 1826 HGRFLEIGKVDLSQNSSLGMAK---LLDNVSVHGILLDSIMDPTVGD 1869


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = +2

Query: 167  TINSDGTSGAMVKVPITGNEHHKLSALGSVDLTNQIKLGAATAGLVYDNVNRHGATLTNT 346
            T+ + G++G+ V  P T +     S+  S+  +     G++T+G          +T TN+
Sbjct: 1548 TVPNTGSTGSTVTNPSTSSSTSGSSSTQSIPSSTAANTGSSTSGPTVATTQGSSSTQTNS 1607

Query: 347  H 349
            +
Sbjct: 1608 N 1608


>U21318-1|AAC46669.1|  457|Caenorhabditis elegans Hypothetical
           protein K03H9.3 protein.
          Length = 457

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 385 TSNRQFISNSRNMSVCEGSSVAVD 314
           T+N  FIS ++N+S+C    +A D
Sbjct: 165 TANATFISIAKNLSICSTECIAKD 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,272,495
Number of Sequences: 27780
Number of extensions: 141856
Number of successful extensions: 287
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)