Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_N10
         (519 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.27 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   3.3  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   5.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = +2

Query: 101 KEKSETTVVTSAPVEPIAKPIKVPSADTAPPVEP-IEKELKEKTETSAPIEPVAE-IPKV 274
           +E S T+     P   +A  +   S D +  ++      L +    S P  P A+ +P+ 
Sbjct: 718 EEVSRTSTAGQFPTN-VATTVTSMSIDQSTVIQTGANVNLWQPLSVSIPPPPSAQNVPQN 776

Query: 275 AESVQTVPTLPIAPLVCPIKSTP 343
             S Q +P +PI P++ P+   P
Sbjct: 777 TNS-QAIPRIPILPMI-PVYCVP 797



 Score = 25.4 bits (53), Expect = 0.35
 Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
 Frame = +2

Query: 83   PPLLEAKEKSETTVVTSAPVEPIAKP--IKVPSADTAPPVEPIEKELKEKTETSAPIEPV 256
            P      + + +  +   P+ P+     + VP  + +  + P+    +EK  +S P++P 
Sbjct: 768  PSAQNVPQNTNSQAIPRIPILPMIPVYCVPVPQVNDSTILSPV----REKLSSSQPMQPP 823

Query: 257  AEIPKVAESVQTVPTLPIAPLVCPIKSTP 343
             + P +   V  + T     +  P+  TP
Sbjct: 824  QQNPYMFLPVSYMSTTMAGVIYPPVIGTP 852


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 374 PMRNLKAQTSLEYSLWGKLGEQL 306
           P+R+  A T  E S WG +G  L
Sbjct: 403 PVRDAIAGTICENSAWGFVGNSL 425


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 86  PLLEAKEKSETTVVTSAPVEPIAKP 160
           P  +  EK    V+T AP+E + +P
Sbjct: 93  PRAKPGEKKFRKVITKAPLECMCRP 117


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 149 IAKPIKVPSADTAPPVEPIEKELKEKTETSAP 244
           +A+ +  PS+  +P   P     + KTE+  P
Sbjct: 115 LAEKLAAPSSQASPTSIPYATRAEIKTESIQP 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,530
Number of Sequences: 438
Number of extensions: 2321
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)