Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_N07
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0476 - 3593555-3594253,3594684-3594850,3594866-3594964,359...    28   3.9  
03_02_0798 - 11321590-11321685,11321802-11321888,11321972-113220...    28   3.9  
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485...    27   5.2  
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973...    27   5.2  
06_03_1025 - 26980631-26981286,26981434-26981557,26982290-269824...    27   9.1  

>07_01_0476 -
           3593555-3594253,3594684-3594850,3594866-3594964,
           3595620-3595806,3595880-3595948,3596551-3596752,
           3597124-3597362,3598374-3598637
          Length = 641

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 71  LQGAPASGCTNCQLRRHLRCYGQGTYN 151
           L G P  G  N  +  +LRCYG  +Y+
Sbjct: 302 LNGVPGCGFLNHAINLYLRCYGSLSYH 328


>03_02_0798 -
          11321590-11321685,11321802-11321888,11321972-11322082,
          11322169-11322515,11322570-11322612,11322669-11322749,
          11323321-11323596,11325277-11325552
          Length = 438

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 93 PLAGAPWSWPTAPADPHIVQCSNQALQR 10
          PL+GAP   P AP  P  + C   AL +
Sbjct: 15 PLSGAPRRRPAAPTRPSALVCGTYALTK 42


>07_01_0646 +
           4853546-4853623,4853732-4855357,4855467-4855751,
           4856131-4856277
          Length = 711

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 90  AGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 263
           AG  + +     G  V   + G +NH +S +G          GA TAG AY+ +N  G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226


>01_01_1208 +
           9733010-9733114,9733920-9733979,9735254-9736280,
           9736332-9736621
          Length = 493

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -2

Query: 256 PFTLS*ANPAVAAPNFIWLVRSTEPRALSL*FSF-PVIGTLTIAPEVPSELTVSAPACRR 80
           P TL   +PA AA + IW     +P    +  SF P +     APE P  L  +  A  R
Sbjct: 426 PKTLRIDDPAEAAKSSIWATLGIKPDDKGIFKSFQPNVAKNGTAPESPQALQANPAAFSR 485

Query: 79  T 77
           +
Sbjct: 486 S 486


>06_03_1025 -
           26980631-26981286,26981434-26981557,26982290-26982426,
           26983220-26983355,26983615-26983922,26985159-26985207
          Length = 469

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +3

Query: 93  GALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 263
           G     SD  + A V  P    E+ ++   G+V++    +L AAT     D + G G
Sbjct: 23  GLRKCKSDSKATASVLAPPKDVEDLQIEGYGNVNIFTYNELRAATKNFRPDQILGEG 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,453,430
Number of Sequences: 37544
Number of extensions: 279684
Number of successful extensions: 711
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)