Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_N06
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...   200   9e-53
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   1.5  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    27   2.6  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    26   3.4  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    26   4.5  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   6.0  
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    25   7.9  
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    25   7.9  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score =  200 bits (489), Expect = 9e-53
 Identities = 90/139 (64%), Positives = 106/139 (76%)
 Frame = +3

Query: 156 TTKSGAPVGVKTAIQTVGKNGPALLQDVNFLDEISSFDRERIPERVVHAKGAGAFGYFEV 335
           TT +G P+    A   VGK GP LLQD + +D    FDRERIPERVVHAKG+GAFG FE 
Sbjct: 13  TTNTGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDRERIPERVVHAKGSGAFGEFEC 72

Query: 336 THDITKYSAARVFEKIGKKTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGNWDLVG 515
           T DITKY+   +F K+GKKTP+  RFSTVGGE G+ DT RDPRGFA+KFYTD+G +D+VG
Sbjct: 73  TDDITKYTKHTMFSKVGKKTPMVARFSTVGGERGTPDTARDPRGFALKFYTDEGIFDMVG 132

Query: 516 NNTPIFFIRDPTLFPSFIH 572
           NNTP+FF+RDP  FP FIH
Sbjct: 133 NNTPVFFLRDPAKFPLFIH 151


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 446 VSRPTLTTYC*ESHCNWCFFTNFFKHSSC 360
           VSRP++TT   +  C  C FTNF + S+C
Sbjct: 552 VSRPSVTTDQGDWLCE-CGFTNFRRRSNC 579


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 412 NLTAIGVFLPIFSNTLAAEYFVI 344
           +L+A  VFL  F+  L A+YFVI
Sbjct: 408 SLSAYAVFLSSFAGILIADYFVI 430


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 511 TRSQFPSSV*NLTANPLGSRTVSADPLSPPTVENLTAI 398
           T+ QF SS     +   G    +  PLSP  VENL+ +
Sbjct: 58  TKEQFNSSSIPRESESEGKTASNTSPLSPKKVENLSKL 95


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 102 SDQLVNFKKSLKDSPGYIT-TKSGAPVGVKTAIQTVGKNGPALLQDVNFLDEISSFDRER 278
           +DQ  +     K S   ++ ++SG P+  +  ++   +NGP+ ++++NF  +I +F +  
Sbjct: 101 TDQNESQASQAKQSSAQLSDSESGYPLDHEE-MRISEENGPSHIENLNFFSDIDNFSKTS 159

Query: 279 IPE 287
             E
Sbjct: 160 AEE 162


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 90  RDPASDQLVNFKKSLKDSPGYITTKS 167
           ++P     + F K LKD+P Y++ +S
Sbjct: 648 QNPCGKLPITFPKKLKDNPAYLSFRS 673


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 214 FLPTVCMAVLTPTGAPDFVVMYPGESFRDFLKLTSWSEA 98
           FL   C  + T  G+P+ V++  G +F  F    +W  A
Sbjct: 225 FLLLACAFLRTSDGSPNVVLIRVGGAFGIFSACAAWYNA 263


>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 303 LHVQHALVYVPCQTMKSHPES*HLGGGQDHSCRQF 199
           + V HA +  P   +++HP   +LG   DH+ + +
Sbjct: 197 VEVVHARINNPDDHLRTHPSVNNLGKDSDHADKMY 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,595
Number of Sequences: 5004
Number of extensions: 49927
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)