Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_N05
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0544 + 15239186-15239589,15242963-15243188                       28   5.1  
11_06_0703 + 26444128-26446215,26446525-26447226                       27   6.7  

>05_03_0544 + 15239186-15239589,15242963-15243188
          Length = 209

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 509 CVRILLKIINYNLCFHELIFISI 441
           CV I L ++ Y+ C+HE I + +
Sbjct: 176 CVDISLSLLGYHACYHENIMLGV 198


>11_06_0703 + 26444128-26446215,26446525-26447226
          Length = 929

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 322 TKLPAPHCFYNI*TRHSFAVHLQQWNK 242
           T+   P C  NI TRH  AV ++  NK
Sbjct: 102 TRCNCPSCHCNIWTRHEVAVKIRSLNK 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,281,211
Number of Sequences: 37544
Number of extensions: 185732
Number of successful extensions: 285
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)