Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_N05
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021447-4|CAB60285.3|  330|Caenorhabditis elegans Hypothetical ...    29   1.5  
U50309-1|AAG24137.1|  335|Caenorhabditis elegans Seven tm recept...    27   6.0  

>AL021447-4|CAB60285.3|  330|Caenorhabditis elegans Hypothetical
           protein F19B2.8 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 191 CFVNLF*INR*VNGERVLVPLL*MYCKRVSSLYIIKAMG 307
           CFV LF +NR  + + +L P+L  + K V   YI+  +G
Sbjct: 40  CFVYLFKMNRERDSKTILFPILSNFYKVVIFFYILLTIG 78


>U50309-1|AAG24137.1|  335|Caenorhabditis elegans Seven tm receptor
           protein 129 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 478 IIYVFTNLSLYQFSLIDNMKKKDGFVSIAFYTFTREWNKDSFM 350
           I+++   LS+Y F+   N  KKD F +I    +  + +K SFM
Sbjct: 139 ILFIVWTLSIY-FNFGPNQIKKDFFRNITMQLYDEDIDKISFM 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,828,516
Number of Sequences: 27780
Number of extensions: 193249
Number of successful extensions: 382
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)