Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_N04
(564 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 27 1.4
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 27 2.5
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 27 2.5
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 26 3.3
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.4
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 26 4.4
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 26 4.4
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 26 4.4
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 5.8
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 5.8
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 7.7
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 25 7.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 7.7
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 27.5 bits (58), Expect = 1.4
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Frame = +2
Query: 113 ITAP-YTDFVRPICLPSMDYTQQPSSNLRFFVAGWGRYKQFENGTNLSSKVKQHVKVPYF 289
+T P Y F RP L D T N +G++ QF+N +L SKV K
Sbjct: 614 LTDPDYETFTRPDAL-YFDRTIAQLENPNSGQKTFGKFLQFDNDNSLPSKV---FKTVLL 669
Query: 290 GRENCQAAQRTLREGAKVVINNGQLCAGGEAGKDSCK 400
CQ TL + + G C+ + K++ K
Sbjct: 670 NNSMCQKPSDTLDKDTAYIAPLGN-CSWVQQAKNTNK 705
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 2.5
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Frame = -3
Query: 562 LGFYCTSYPWNI-----LVNVRIYAGDVY*AAFI---RSKANNTDGFKCVAHFIHQGSSG 407
+GF T WN+ LVN AG ++ A ++ A D CV I G
Sbjct: 86 IGFSTTITEWNLHTGKPLVNQDSNAGAIWSIAICDETKTLAVGCDDGSCVLFDISGGPGV 145
Query: 406 VTFARVLASFTSR 368
+ F RVL TSR
Sbjct: 146 IEFKRVLMRQTSR 158
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 26.6 bits (56), Expect = 2.5
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 233 ENGTNLSSKVKQHVKVPYFGRENCQAAQRTLREGAKVVINNGQLCAGGEAGK 388
E GT+L++ KQ P GRE + QRT++ ++ NN L GK
Sbjct: 96 EYGTDLTALAKQGKLDPVIGRE--EEIQRTIQILSRRTKNNPALVGPAGVGK 145
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 3.3
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -1
Query: 477 SVPKLTTPMASNVLPTSYIRGPPESPLHESLPAS 376
SV T S V+P+S I P ES PAS
Sbjct: 208 SVVDSATSSVSTVIPSSIISAAPPDSASESTPAS 241
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 25.8 bits (54), Expect = 4.4
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 480 LSVPKLTTPMASNVLP-TSYIRGPPESPLHESLPASPPAHSCPLFITT 340
+S PK TT S P T I PES +S+ S +HS P+ + +
Sbjct: 42 VSCPKYTTIYTSGTSPDTKTIY--PESTSTKSITTSTQSHSSPVIVVS 87
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 25.8 bits (54), Expect = 4.4
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -1
Query: 477 SVPKLTTPMASNVLPTSYIRGPPESPLHESLPASPPAHSCPLFITTFAP 331
S+P TT AS+ L TSY + + SL A P P + P
Sbjct: 350 SLPTFTTNSASSGLSTSYTNNNDTTSDNNSLQAVPRLDPVPSLTLSSTP 398
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -3
Query: 382 SFTSRAQLPVIYNNLCTFTQCPLRCLTVLSTKVWNF 275
SF SR Q+P + + P +CL WN+
Sbjct: 384 SFKSRFQMPTVEEGFTNVEEVPFKCLKDYE-DTWNY 418
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 25.8 bits (54), Expect = 4.4
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 480 LSVPKLTTPMASNVLP-TSYIRGPPESPLHESLPASPPAHSCPLFITT 340
+S PK TT S P T I PES +S+ S +HS P+ + +
Sbjct: 42 VSCPKYTTIYTSGTSPDTKTIY--PESTSTKSITTSTQSHSSPVIVVS 87
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 5.8
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -1
Query: 486 PHLSV-PKLTTPMASNVL--PTSYIRGPPESPLHESLPASPP 370
P LS PK ++NV TS+ P SPLH+S A+ P
Sbjct: 275 PSLSFQPKKARYESANVSFNDTSFTNVPTSSPLHQSTTANHP 316
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 5.8
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Frame = -1
Query: 513 VYTPGMFTEPHLSVP----KLTTPMASNVLPTSYIRGPPESPLHESLPASPPAHSCPLF 349
V+TPG FT P P + P SN S P+SP S + P+ S P+F
Sbjct: 441 VFTPGKFTIPSKPAPVNASRPMMPQQSNNSEASIPSTTPQSPSVVSNGENKPS-SSPVF 498
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 402 PLHESLPASPPAHSCPLFITTFAPSR 325
P+ ++P SP + P++ TTF S+
Sbjct: 305 PVSPNIPVSPSSSFVPMYPTTFPSSK 330
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 7.7
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -1
Query: 474 VPKLTTPMASNVLPTSYIRGPPESPLHESLPASPPAHSCPLFIT-TFAPS 328
V + TTP LP S I+ PP P+ + PA+ + P T F PS
Sbjct: 337 VQRKTTPKIQR-LPPSSIQIPPPKPM-QKFPANAASSESPPNATGNFLPS 384
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 7.7
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Frame = -1
Query: 507 TPGMFTEPHL--SVPKLTTPMASNVLPTSYIRGPP---ESPLHESLPASPPA 367
TP + T P L S P P A LP PP +P+ LPA PA
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPA 465
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,997
Number of Sequences: 5004
Number of extensions: 52734
Number of successful extensions: 160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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