Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_N04
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 33 0.12
02_01_0302 - 2021221-2023305 30 1.1
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 29 1.9
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240... 29 2.6
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 29 3.4
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 29 3.4
09_02_0082 - 4060018-4061604 28 4.5
07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026 28 4.5
05_02_0028 - 5764980-5766374 28 4.5
01_06_0969 - 33472588-33474480,33475543-33475623,33475692-334757... 28 4.5
01_06_0451 - 29476892-29477516,29477600-29477843,29478313-294787... 28 4.5
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 28 4.5
01_01_0650 - 4948852-4950012 28 4.5
01_06_0140 - 26881282-26881290,26882027-26882128,26882816-268829... 28 5.9
11_01_0560 - 4413174-4414469 27 7.8
11_01_0494 + 3804913-3805679,3806341-3806530 27 7.8
09_02_0115 + 4413714-4414475 27 7.8
07_03_1155 - 24413270-24413728 27 7.8
04_04_1285 - 32382614-32382720,32383032-32383710,32383816-323839... 27 7.8
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = -1
Query: 486 PHLSVPKLTTPMASNVLPTS------YIRGPPESPLHESLPASPPAHSCPLFITTFAP 331
P VP+ T + +N LP++ ++ PP +PL ++ P PP H C + FAP
Sbjct: 26 PPGGVPQSITALLNNPLPSASSSSYYWLTWPPPTPLPDA-PPPPPPHPCDVSRADFAP 82
>02_01_0302 - 2021221-2023305
Length = 694
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Frame = -1
Query: 507 TPGMFTEPHLSVPKLTTPMASNVLPTSYIRGPPE---SPLHESLPAS---PPAHSCP 355
TP + P + P +P +S+ P SY PP+ +P H S P+S PP+HS P
Sbjct: 480 TPSHPSPPGSTTPSYPSPPSSSTTP-SY-HSPPQGHTTPSHPSPPSSSTAPPSHSPP 534
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 462 TTPMASNVLPTSYIRGPPESPLHESLPASPPAHSCPLFITTFAPS 328
T PM + + PP +P + P PP+H P IT+ AP+
Sbjct: 405 TIPMPPIIAAPAITVMPPPAPSQQPQPPPPPSHPTP--ITSVAPA 447
>07_03_1764 +
29322683-29323387,29323809-29323889,29323968-29324072,
29324453-29325382,29326728-29326856,29326953-29327042,
29327237-29327293,29327362-29327394
Length = 709
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 11/52 (21%)
Frame = +2
Query: 176 QPSSNLRFFVAGWG-----RYKQFENG------TNLSSKVKQHVKVPYFGRE 298
QP +++RF +AG+G YKQ NG T+L ++ H+ VP GRE
Sbjct: 216 QPLTSMRFILAGFGSPLKAEYKQLINGMGGQVLTSLEYEIATHI-VPMGGRE 266
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -1
Query: 486 PHLSVPKLTTPMASNVLPTSYIRGPPESPLHESLPAS-PPAHSCPLFITTFAPS 328
P L+VP TP PT P SP P S PP + P+ +FAPS
Sbjct: 26 PPLAVPATNTPPNPATTPTPLTPNPNPSPTLPPPPMSTPPVVAPPMH--SFAPS 77
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -1
Query: 471 PKLTTPMASNVLPTSYIRGPPE-SPLHESLPASPPAHSCP 355
P P A+ + P GPP S + PA+PP H P
Sbjct: 26 PPSNAPAAAPIFPGGPAAGPPPPSAAYSYPPATPPFHRAP 65
>09_02_0082 - 4060018-4061604
Length = 528
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -1
Query: 486 PHLSVPKLTTPMASN--VLPTSYIRGP-PESPLHESLPASPPAHSCPLF 349
PHL VP++ +P A VL T P P P+ L +PPA P F
Sbjct: 162 PHLCVPRVLSPPAPTPPVLATHVPTPPAPAPPVPTPLAPAPPADVPPGF 210
>07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026
Length = 961
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -1
Query: 444 NVLPTSYIRGPPESPLHESLPASPPAHSCPLFITTFAPSRNVLC 313
N++ T + PP PL +L + P+++CP I + + C
Sbjct: 443 NLVGTLFAGPPPYVPLPSALSLADPSYTCPPAINVSTSTLSTCC 486
>05_02_0028 - 5764980-5766374
Length = 464
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 435 PTSYIRGPPESPLHESLPASPPA 367
PTS + PP SP ES P SP A
Sbjct: 296 PTSTLVSPPRSPPSESPPLSPDA 318
>01_06_0969 -
33472588-33474480,33475543-33475623,33475692-33475740,
33475866-33476281,33477208-33477447
Length = 892
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Frame = -1
Query: 501 GMFTEPHLSVPKLTTPMASNV-------LPTSYIRGPPESPLHESLPASPPAH 364
GM +P +P++ TP N LP+ + P P P +PPAH
Sbjct: 234 GMCQKPDKLLPRIVTPFLQNARNVDIVKLPSVFAPRPKPQPPPPPPPPTPPAH 286
>01_06_0451 -
29476892-29477516,29477600-29477843,29478313-29478714,
29481164-29481358,29481418-29481537,29481615-29481683,
29481901-29481999,29483857-29483946,29484049-29484180,
29485062-29485173
Length = 695
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -1
Query: 507 TPGMFTEPHLSVPKLTTPMASNVLPTSYIRGPPESPLHESLPASPPAHSCPLFITTFAPS 328
+P +F P S P L A+ P S + PP+ H SLP + P + + +PS
Sbjct: 122 SPPVFPPPIRSYPPLP---ANKPYPNSPVVAPPKGRHHHSLPVNNTRVKGPAYSPSNSPS 178
>01_05_0687 +
24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -1
Query: 510 YTPGMFTEPHLSVPKLTTPMASNVLPTSYIRGPPESPLHESLPASPPA 367
++P + TE S P++ P S S++ PP +PL ES+P+ P A
Sbjct: 759 FSPTIGTET--SSPEMA-PAGSENCKVSWLPLPPPTPLGESMPSLPVA 803
>01_01_0650 - 4948852-4950012
Length = 386
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 435 PTSYIRGPPESPLHESLPASP 373
PTS + PP+SP ES P SP
Sbjct: 222 PTSTLMSPPKSPPSESPPLSP 242
>01_06_0140 -
26881282-26881290,26882027-26882128,26882816-26882924,
26883712-26883860,26883941-26884043,26884635-26884810,
26885004-26885066,26885258-26885346,26885428-26885538,
26885610-26885744,26886415-26886580,26886788-26886856,
26886943-26887230,26888612-26888866
Length = 607
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 368 AGGEAGKDSCKGDSGGPLMYEVGNTFEAIGVVSFGTDKCGSVN 496
+ G G + GD P+M E G F GT+ C SVN
Sbjct: 200 SSGGIGPEVRSGDLPQPIMLETGQEFTFTIKRGVGTETCVSVN 242
>11_01_0560 - 4413174-4414469
Length = 431
Score = 27.5 bits (58), Expect = 7.8
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Frame = +2
Query: 290 GRENCQAAQRTLREGAKVVINN--GQLCAGGEAGKDSCKGDSGG----PLMYEVGNTFEA 451
G E+ + A + G+ + + G + GG + S G +GG + E +
Sbjct: 74 GEEDSKGAVERVAFGSSAAVESELGGVGGGGAGSEVSVPGGAGGGRGEDMETEALDVKPV 133
Query: 452 IGVVS---FGTDKCGSVNIPGVYTNIYEYIPW 538
+GV + G G V PG + + +PW
Sbjct: 134 VGVGAGGAMGAHVAGGVGAPGAFPESKQLVPW 165
>11_01_0494 + 3804913-3805679,3806341-3806530
Length = 318
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 290 GRENCQAAQRTLREGAKVVINNGQLCAGGEAGKDSCKGDSG-GPLM 424
GRE C A + E A V +++ + C SC+ G GPL+
Sbjct: 271 GRETCDACPAQIDENASVRLSHQEGCFSVSGHCPSCRCSRGHGPLI 316
>09_02_0115 + 4413714-4414475
Length = 253
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 452 WLQMCCPLHTSGVLRSHLCTSPCQLHLPRTVARY 351
WL+ C + +G L H+C +PC L L ++
Sbjct: 193 WLESHC-VRAAGSLYWHICNNPCALALDAATLQF 225
>07_03_1155 - 24413270-24413728
Length = 152
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 486 PHLSVPKLTTPMASNVLPTSYIRGPPESPLHESLPASPP 370
PH +P+L P LP PE P H ++P PP
Sbjct: 46 PHPELPELPKPELPPPLPELPRPVVPELPPHPAVPELPP 84
>04_04_1285 -
32382614-32382720,32383032-32383710,32383816-32383926,
32384007-32384065,32384163-32384271,32384387-32384575,
32384650-32385476,32385501-32385633
Length = 737
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -1
Query: 462 TTPMASNVLPTSYIRGPPESPLHESLPASPPAHSCPL 352
+TP TSY P + +H S P++P H L
Sbjct: 558 STPYQHQAQSTSYPSTPYQDQIHSSYPSNPTQHQIHL 594
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,487,546
Number of Sequences: 37544
Number of extensions: 369126
Number of successful extensions: 1282
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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