Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_N03
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    27   1.4  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    26   1.9  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   3.3  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   4.4  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   4.4  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    24   7.7  

>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
 Frame = +1

Query: 151 LITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYV---------CT 303
           L++  KRLSG + +A +   D         N+Y T+   E +  I+ ++         C 
Sbjct: 34  LLSMDKRLSGLEASAGILRDDVTNYNRVSSNIYDTLKEMESLQVIHSHLPVLQKGLQECQ 93

Query: 304 AKNAAVDEEVVTVEYEIKGVTKDNSGY*GEPV 399
             N +V + + +V   +K + +D +   G P+
Sbjct: 94  NLNKSVSQNLKSVMDILKSLAEDYTSLEGSPL 125


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +1

Query: 160 WKKR--LSGADPNADVTDFDRRITAGPDGN 243
           WK+   ++  +PNA +T F+R   +  DGN
Sbjct: 458 WKRTDDIASGEPNAILTSFNRNFRSRNDGN 487


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 157  TWKKRLSGADPNADV 201
            TW+KRL G   N DV
Sbjct: 1468 TWRKRLEGCQKNVDV 1482


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 63  IASEDTRENANRRQAFPIGLCAAERL 140
           I + DT   A RRQ F   L AAER+
Sbjct: 474 IFNNDTLSRAERRQRFRQSLRAAERI 499


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 37  SFRKTYLIASPAKTHEKTP 93
           +FRKTYL AS A  H   P
Sbjct: 585 AFRKTYLFASNAGIHINAP 603


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 206 SVTSALGSAPDKRFFQVIKGLG*AFGCTQSNWKGL 102
           S  S++GS   K+  + I  L   FGC + NWK L
Sbjct: 311 SQCSSMGSFGPKQ--EYIAELTDGFGCQRGNWKFL 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,485,310
Number of Sequences: 5004
Number of extensions: 27878
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)