Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_N03
(401 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0039 + 447573-448911,451247-451296,451322-451423 30 0.79
02_05_0854 - 32267047-32267298,32267383-32268194,32268289-322684... 29 1.8
02_05_0853 + 32261705-32261794,32261895-32262027,32262117-322629... 29 1.8
01_03_0269 + 14442886-14442978,14443306-14443377,14443551-144440... 29 1.8
10_01_0037 + 434995-436299 28 2.4
06_03_0987 - 26589277-26589420,26589620-26589774,26589845-26589890 27 4.2
04_04_0144 - 23095172-23095830,23095915-23097265 27 5.6
03_06_0042 + 31247084-31247641,31248396-31248482,31248684-312487... 27 5.6
02_04_0217 + 20992238-20992397,20992488-20992792,20992910-209930... 27 5.6
11_04_0203 - 14828009-14828110,14828171-14828269,14828375-148284... 27 7.3
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 27 7.3
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778... 26 9.7
04_03_1016 + 21742060-21742219,21742301-21742596,21742705-217427... 26 9.7
02_05_0733 + 31309835-31310434,31314138-31314254,31314364-313148... 26 9.7
01_03_0286 - 14657682-14657803,14658194-14658419,14659894-146598... 26 9.7
>10_01_0039 + 447573-448911,451247-451296,451322-451423
Length = 496
Score = 29.9 bits (64), Expect = 0.79
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 132 RLHTVQLERPAFDWRFLVCLRWRCDEVSLPEADHPR 25
RL +L R D++ L WRC +LP A H R
Sbjct: 259 RLLPARLGRRCTDFQLLAATLWRCRTAALPYAPHRR 294
>02_05_0854 -
32267047-32267298,32267383-32268194,32268289-32268421,
32268530-32268619
Length = 428
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 133 NAYPKPLITWKKRLSGADPNADVTDFDRR--ITAGPDGNLY 249
NA+ + L+ W R+ GA+ NA DF + + +G L+
Sbjct: 246 NAHRQELVNWVDRVGGANSNATAFDFTTKGILNVAVEGELW 286
>02_05_0853 +
32261705-32261794,32261895-32262027,32262117-32262928,
32263020-32263271
Length = 428
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 133 NAYPKPLITWKKRLSGADPNADVTDFDRR--ITAGPDGNLY 249
NA+ + L+ W R+ GA+ NA DF + + +G L+
Sbjct: 246 NAHRQELVNWVDRVGGANSNATTFDFTTKGILNVAVEGELW 286
>01_03_0269 +
14442886-14442978,14443306-14443377,14443551-14444045,
14444134-14444253
Length = 259
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 133 NAYPKPLITWKKRLSGADPNADVTDF 210
NA+ + L+ W R+ GA+ NA DF
Sbjct: 123 NAHRQELVNWVNRVGGANSNATAFDF 148
>10_01_0037 + 434995-436299
Length = 434
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 132 RLHTVQLERPAFDWRFLVCLRWRCDEVSLPEADHPR 25
RL L R D++ L WRC +LP A H R
Sbjct: 258 RLLPAPLGRRCTDFQLLPAALWRCRTAALPYAPHRR 293
>06_03_0987 -
26589277-26589420,26589620-26589774,26589845-26589890
Length = 114
Score = 27.5 bits (58), Expect = 4.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 57 EVSLPEADHPRAGNTGWGF 1
EV LP + PR G+ WGF
Sbjct: 24 EVQLPRGNDPRGGSYPWGF 42
>04_04_0144 - 23095172-23095830,23095915-23097265
Length = 669
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 7 PAGVASSRVISFRKTYLIASPAKTHEKTPI 96
PAG SSRV +R ++A P + +K +
Sbjct: 518 PAGAPSSRVAGYRAPEVVADPWRLSQKADV 547
>03_06_0042 +
31247084-31247641,31248396-31248482,31248684-31248779,
31248897-31248998,31249455-31249541,31249692-31249759,
31249879-31249963
Length = 360
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 16 VASSRVISFRKTYLIASPAKTHEKTPIEGRPFQL-DCVQPNAY 141
V SSR +R L+AS ++ P EG+ + + D P A+
Sbjct: 57 VISSRGFPYRSLRLLASERSAGKRLPFEGQEYTVQDLAAPGAF 99
>02_04_0217 +
20992238-20992397,20992488-20992792,20992910-20993038,
20993476-20993631
Length = 249
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +2
Query: 41 SGRLTSSHRQRRHTRKR-QSKAGLSNWTVC 127
S LTSS RR RKR S +NW +C
Sbjct: 134 SSNLTSSSSNRRSHRKRGHSSMESNNWVLC 163
>11_04_0203 -
14828009-14828110,14828171-14828269,14828375-14828461,
14828733-14829111,14829214-14829377,14829544-14829636,
14829843-14829989,14830065-14830166,14830392-14830490,
14830669-14830803,14830928-14831006,14831111-14831186,
14831281-14831370,14831723-14831798,14831880-14831914,
14832303-14832377,14832468-14832840
Length = 736
Score = 26.6 bits (56), Expect = 7.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 201 HISVRISSGQTFLPSNQGFRVSVRLHTVQLERPAFDWRFLVCLRWR 64
H S R+ + +L FR+ +R V+ A D R+ C+R+R
Sbjct: 376 HYSFRVYASVLYLKLPAYFRIILRGEEVKHHYIASDLRYTQCIRYR 421
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 26.6 bits (56), Expect = 7.3
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 22 SSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVQPNAYPKPLITW 162
+S+++S +KT +PA KT I GR L + PN L+ W
Sbjct: 197 TSQLLSAKKT----NPAAHSSKTEIGGRNAILKLLSPNLIRSSLLLW 239
>11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,
7782225-7782324,7782720-7782801,7782928-7782940,
7783621-7783681
Length = 1433
Score = 26.2 bits (55), Expect = 9.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 96 DWRFLVCLRWRCDEVSLPE 40
+W+ + C+RW+ EVS P+
Sbjct: 1281 NWQKIECIRWKLIEVSKPD 1299
>04_03_1016 +
21742060-21742219,21742301-21742596,21742705-21742758,
21743480-21743503
Length = 177
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 38 ASGRLTSSHRQRRHTRKRQSKAGLSNWTVC 127
+S +SS +R H +K S NW +C
Sbjct: 131 SSSSTSSSSSKRSHKKKGHSDTESKNWVIC 160
>02_05_0733 +
31309835-31310434,31314138-31314254,31314364-31314806,
31316831-31317137
Length = 488
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +3
Query: 27 EGDQLQEDLPHRIASEDTRENANRRQAFPIG---LCAAERLP 143
EGDQ++ED RI ++ +++ R + G +C+A+ P
Sbjct: 96 EGDQMKEDKKGRIKGKEKKDDKARERKGEAGFIFMCSAKTKP 137
>01_03_0286 -
14657682-14657803,14658194-14658419,14659894-14659899,
14661218-14661298,14662498-14662888,14663207-14663352,
14665455-14665562
Length = 359
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 154 ITWKKRLSGADPNADVTDFDRRITAGPD 237
+TWK+RL D V RR+ AG D
Sbjct: 199 LTWKERLRSRDGLFSVVACGRRLVAGRD 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,132,030
Number of Sequences: 37544
Number of extensions: 197918
Number of successful extensions: 572
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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