Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_N03
         (401 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              31   0.005
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   9.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 31.1 bits (67), Expect = 0.005
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +1

Query: 82  EKTPIEGRPFQLDCVQPNAYPKPLITWKKRLSGADPNADVTD--FDRRITAGPDGNLYFT 255
           +K   +G   +++C + + +PKP +TWKK  +  D   D TD        +  DG L   
Sbjct: 687 DKAFAQGSDARVEC-KADGFPKPQVTWKK--AAGDTPGDYTDLKLSNPDISVEDGTLSIN 743

Query: 256 IVTKEDVSDIYKYVCTAKN 312
            + K   ++ Y Y+C A N
Sbjct: 744 NIQK--TNEGY-YLCEAVN 759



 Score = 27.1 bits (57), Expect = 0.080
 Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 1/109 (0%)
 Frame = +1

Query: 4   TPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVQPNAYPKPLITWKKRLSGA 183
           +PAG   SR ++ R           +++  I G    L CV P+     +          
Sbjct: 85  SPAGSVHSRDVNVRAVVAQYYDTDVNKEYAIRGNSAILKCVVPSFVADFVKVLSWHTDQG 144

Query: 184 DPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYK-YVCTAKNAAVDE 327
           +      D+D +    P G L+   V  ED    YK Y C  K+    E
Sbjct: 145 EEFVPGDDYDGKYLVLPSGELHIRDVGPEDG---YKTYQCRTKHRLTGE 190



 Score = 25.8 bits (54), Expect = 0.18
 Identities = 23/91 (25%), Positives = 38/91 (41%)
 Frame = +1

Query: 82  EKTPIEGRPFQLDCVQPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIV 261
           +K  + G   ++ C     YP   I W++       +  V   +R+    P+G L    V
Sbjct: 499 KKAIVAGETLRVTCPVAG-YPIESIVWER-------DTRVLPINRKQKVFPNGTLIIENV 550

Query: 262 TKEDVSDIYKYVCTAKNAAVDEEVVTVEYEI 354
             E +SD   Y C A+NA       T+E ++
Sbjct: 551 --ERMSDQATYTCVARNAQGYSARGTLEVQV 579



 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +1

Query: 289 KYVCTAKNAA 318
           +YVCTA+NAA
Sbjct: 655 EYVCTAENAA 664


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 232 PDGNLYFTIVTKEDVSDIYKYVCTAKN 312
           PDG +    ++  + SD   Y C A N
Sbjct: 865 PDGVIAQLQISSAEASDSGAYFCQASN 891



 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 115 LDCVQPNAYPKPLITWKK 168
           L C Q    P P I WKK
Sbjct: 729 LHC-QAQGVPTPTIVWKK 745


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 232 PDGNLYFTIVTKEDVSDIYKYVCTAKN 312
           PDG +    ++  + SD   Y C A N
Sbjct: 861 PDGVIAQLQISSAEASDSGAYFCQASN 887



 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 115 LDCVQPNAYPKPLITWKK 168
           L C Q    P P I WKK
Sbjct: 725 LHC-QAQGVPTPTIVWKK 741


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 120 VQLERPAFDWRFLVCLRW 67
           V L  P +DW   + L+W
Sbjct: 255 VPLSHPTYDWFEKLELKW 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,880
Number of Sequences: 438
Number of extensions: 1899
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)