Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_N02
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   2.7  
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi...    24   6.3  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    24   6.3  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    24   8.3  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    24   8.3  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    24   8.3  

>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -3

Query: 229 YSQTSRGSVNAFKKYHDYSGFDEKRKKIVILFI 131
           +S TSR  + + K+++  S  D +R++ + LF+
Sbjct: 507 WSSTSRDLIESVKRFYSNSFVDFQRQEAISLFL 539


>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 151

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 9/40 (22%), Positives = 19/40 (47%)
 Frame = -2

Query: 137 LYKIEILIYINRVSGLGVTAASRLHRARDMRNYINLNCYK 18
           L  +++      +SG+ +    R  R  D+   +N+ CY+
Sbjct: 48  LTNVQLTTLSQLLSGMTIEGDLRRQRNADISRLVNIRCYR 87


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = +2

Query: 38  YNSAYLWPGVTWMLRSHRAPRRDLYK*VFLFYKEDHNFFSFFIESRIIMIFFKSINATAR 217
           + S   W   T+ + +H +     +  +  FY    ++ S  + +RI+ IFF  + +  +
Sbjct: 198 FRSILSWHNETFNIWTHLSAFIVFFAVLAYFYPSSSSWVSSNVSNRIVRIFF--LLSAMK 255

Query: 218 CL 223
           CL
Sbjct: 256 CL 257


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -2

Query: 149 NCDPL-YKIEILIYINRVSGLG 87
           +CD + Y IE+  Y+ +VSG G
Sbjct: 918 SCDSVGYNIEVKRYVKKVSGQG 939


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 271 VTIVDNKTVINKLNYSQTSRGSVNA 197
           VT+  NK +I+K    +T  GSVN+
Sbjct: 230 VTVFGNKGIISKAFDIETEDGSVNS 254


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 256 NKTVINKLNYSQTSRGSVNAFKKYHDYSGFDEK 158
           NKT  +K N    + G++N +      +GF EK
Sbjct: 126 NKTAFSKWNQLGKTYGNINVYFDEEWLNGFHEK 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,386,345
Number of Sequences: 5004
Number of extensions: 24276
Number of successful extensions: 59
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)