Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_N02
         (363 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-13|AAK68483.1|  374|Caenorhabditis elegans Nuclear horm...    29   1.00 
Z83109-11|CAJ43454.1|  345|Caenorhabditis elegans Hypothetical p...    27   5.3  
U21323-10|AAW30670.1|  805|Caenorhabditis elegans Hypothetical p...    26   9.3  
U21323-9|AAA62553.1|  971|Caenorhabditis elegans Hypothetical pr...    26   9.3  
AF099922-1|AAK21410.2|  509|Caenorhabditis elegans Hypothetical ...    26   9.3  

>AC024776-13|AAK68483.1|  374|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 122 protein.
          Length = 374

 Score = 29.1 bits (62), Expect = 1.00
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +2

Query: 119 VFLFYKEDHNFFSFFIESRII 181
           +++  K+DH+FF +F+ES+ I
Sbjct: 354 MYIMNKQDHSFFKYFVESKRI 374


>Z83109-11|CAJ43454.1|  345|Caenorhabditis elegans Hypothetical
           protein F44G3.12 protein.
          Length = 345

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 113 YINRVSGLGVTAASRLHRARDMRNYINLNCYKITI 9
           +IN ++GL +   SRL R+   +NYI     KI +
Sbjct: 99  FINFMNGLKIRKVSRLLRSAISQNYIGFKEIKIEV 133


>U21323-10|AAW30670.1|  805|Caenorhabditis elegans Hypothetical
           protein C45G9.10b protein.
          Length = 805

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +2

Query: 41  NSAYLWPGVTWMLRSHRAPRRDLYK*VFLFYKEDHNFFSFFIESRIIMIFFK 196
           N A  + G   ++  +R P  +  + VF+F  E+ +FF F ++S+   IF++
Sbjct: 140 NKALSFDGNEEVININR-PSTNYSELVFVFKTENKHFFQFAMQSQETGIFYR 190


>U21323-9|AAA62553.1|  971|Caenorhabditis elegans Hypothetical
           protein C45G9.10a protein.
          Length = 971

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +2

Query: 41  NSAYLWPGVTWMLRSHRAPRRDLYK*VFLFYKEDHNFFSFFIESRIIMIFFK 196
           N A  + G   ++  +R P  +  + VF+F  E+ +FF F ++S+   IF++
Sbjct: 306 NKALSFDGNEEVININR-PSTNYSELVFVFKTENKHFFQFAMQSQETGIFYR 356


>AF099922-1|AAK21410.2|  509|Caenorhabditis elegans Hypothetical
           protein F56F11.5 protein.
          Length = 509

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +3

Query: 90  EPRDAIYINEYFYFIKRITIFFLFSSNPE*S*YFLKA---LTLPRDVCE*FNLFITVLLS 260
           E RD     +YF F   +T+FF+   NP+ + Y L +   ++L    C    LFIT  +S
Sbjct: 264 EKRDEYNFLQYFSFSYVLTVFFV-QQNPKKNSYILGSFVPISLEILYCV---LFITATVS 319

Query: 261 TM 266
           T+
Sbjct: 320 TL 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,625,478
Number of Sequences: 27780
Number of extensions: 133579
Number of successful extensions: 305
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)