Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M24
         (138 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    23   4.2  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    23   5.5  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    23   5.5  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    23   5.5  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   7.3  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    22   9.6  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    22   9.6  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    22   9.6  
SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr...    22   9.6  

>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 68  KIFHILHAYRILSIKKSATK 127
           K+FH+   + ILSIK S  K
Sbjct: 596 KLFHLQEEHTILSIKASYNK 615


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 79  VKYLPICGVLGRQLSWV*WRR 17
           ++Y  + GVLG  L W  W++
Sbjct: 644 LQYFWLAGVLGTILFWALWKK 664


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 64  WEDISHTPRIQNTVNQEIGDKI 129
           WED+     ++  + +E+ DKI
Sbjct: 254 WEDVRREMVVEKGLKEEVADKI 275


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/39 (20%), Positives = 22/39 (56%)
 Frame = +1

Query: 22  SIRPTRVVFQEHHKWEDISHTPRIQNTVNQEIGDKIGNP 138
           +I  T++   + + W+  + +P+    +  ++G ++GNP
Sbjct: 432 NISDTQIGISKTNSWKMAAISPKSSYALYFDLGKEMGNP 470


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 6   NSSFLLHQTHESCLPRTPQMGRYFTYSTHT 95
           ++S+     +ES  PR PQ      YST T
Sbjct: 131 SASYRTRGEYESSSPRVPQKSLRRYYSTRT 160


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 101 VFCMRGVCEISSHLWCSWKTTLVGL 27
           VFCM  +    S   C W+  L GL
Sbjct: 480 VFCMGDLKSSDSLKVCDWQNDLEGL 504


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 7   IPHFFSIRPTRVVFQEHHKWEDISHTPRIQNTV 105
           + HFF      V F   H+ + I H  R +NT+
Sbjct: 322 VVHFFIRDSLEVPFIWQHRRDYIVHNNRERNTI 354


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 14  ISSPSDPRELSSKNTTNG 67
           +SSP D    +S NT NG
Sbjct: 533 VSSPLDRNATNSSNTLNG 550


>SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 103 QYSVCVEYVKYLPICGVLG 47
           +YSV V  VK++ +CG  G
Sbjct: 119 EYSVTVLKVKHIIVCGHYG 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 704,330
Number of Sequences: 5004
Number of extensions: 10338
Number of successful extensions: 31
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 26
effective length of database: 2,232,374
effective search space used: 42415106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)