Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M24
         (138 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1000 + 22130210-22130300,22130412-22130683,22130780-221309...    26   3.7  
10_08_0372 + 17280560-17280811,17280901-17281065,17281305-172814...    25   6.4  

>10_08_1000 +
           22130210-22130300,22130412-22130683,22130780-22130915,
           22131228-22131361,22131550-22131655,22131829-22131914,
           22132304-22132492,22132580-22132738,22133083-22133196,
           22133483-22133734
          Length = 512

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 53  NTTNGKIFHILHAYRILSIKKSATKLGT 136
           N  N KI+H L+AYR+L  ++   +L +
Sbjct: 192 NAENRKIYHDLNAYRVLFDEEGDPRLSS 219


>10_08_0372 +
           17280560-17280811,17280901-17281065,17281305-17281410,
           17281432-17281487,17281607-17282201,17282863-17282975,
           17283106-17283326,17284113-17284437
          Length = 610

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 45  LPRTPQMGRYFTYSTHTEYCQSRNRRQNWE 134
           L R  + G YF YS+   Y Q    R+ W+
Sbjct: 295 LDRLLRPGGYFAYSSPEAYAQDEEDRRIWK 324


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,333,572
Number of Sequences: 37544
Number of extensions: 61002
Number of successful extensions: 251
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 26
effective length of database: 13,817,204
effective search space used: 262526876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)