Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M24
         (138 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc...    27   2.4  
Z49968-3|CAA90260.1|  189|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AL132951-1|CAC44310.2|  707|Caenorhabditis elegans Hypothetical ...    25   7.4  
AL023828-23|CAD56603.1|  294|Caenorhabditis elegans Hypothetical...    25   7.4  
Z81536-3|CAB63200.1|  333|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase
           associated protein homologprotein 1, isoform a protein.
          Length = 1256

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 78  TYSTHTEYCQSRNRRQNWEP 137
           TY++HT+   SRNRR + +P
Sbjct: 653 TYNSHTDDFDSRNRRDSSQP 672


>Z49968-3|CAA90260.1|  189|Caenorhabditis elegans Hypothetical
           protein M110.3 protein.
          Length = 189

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -2

Query: 86  GVCEISSHLWCSWKTT--LVGLMEKK*GI 6
           G+ EI+  LW +W+T    VG+M    GI
Sbjct: 93  GLLEITVDLWITWRTVSGFVGMMNGTKGI 121


>AL132951-1|CAC44310.2|  707|Caenorhabditis elegans Hypothetical
           protein Y67H2A.1 protein.
          Length = 707

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 45  LPRTPQMGRYFTYSTHTEYCQSRN 116
           LP   Q+G Y ++S HT+Y Q+ N
Sbjct: 383 LPMRMQVG-YVSFSAHTDYHQTSN 405


>AL023828-23|CAD56603.1|  294|Caenorhabditis elegans Hypothetical
           protein Y17G7B.20 protein.
          Length = 294

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 11  LISSPSDPRELSSKNTTNGKIFHILHAYR 97
           L+ SPS  R   SK T+N K+ +    YR
Sbjct: 130 LVKSPSSKRGRPSKVTSNSKMANYARNYR 158


>Z81536-3|CAB63200.1|  333|Caenorhabditis elegans Hypothetical
           protein F40D4.3 protein.
          Length = 333

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 127 FCRRFLD*QYSVCVEYVKYLPICG 56
           F   F+D  +SV +  V +LP+CG
Sbjct: 57  FVGAFVDVYFSVLIMPVLHLPVCG 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,844,518
Number of Sequences: 27780
Number of extensions: 56877
Number of successful extensions: 203
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 12,740,198
effective HSP length: 26
effective length of database: 12,017,918
effective search space used: 228340442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)