Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M23
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   1.6  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   6.5  

>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 20   PLSTSYRCSAPTRLNMTADSASTVAALILSRLQEEAFRDVPG 145
            P+   YRC   +R+N +      +A+    RL    F+D+ G
Sbjct: 1339 PMRLKYRCPKASRVNQSTLPIWVLASKCFVRLMINCFKDLKG 1380


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 289 LPLHVNTRRHVCRGSSRVNVVNILYIL 369
           LP+ ++T RHV    S++N ++++ IL
Sbjct: 433 LPIVLSTIRHVNTRESKINALSLVQIL 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,653,834
Number of Sequences: 5004
Number of extensions: 27592
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)