Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M23
         (504 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0296 - 11875922-11876378,11876705-11877045                       29   1.6  
09_03_0041 + 11826788-11828002,11828101-11828563,11828668-118287...    29   2.1  
12_01_0592 + 4848467-4849164,4849413-4849491                           29   2.8  
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967...    27   8.6  
08_02_0493 - 17770723-17770758,17770772-17770996,17771051-177720...    27   8.6  

>05_03_0296 - 11875922-11876378,11876705-11877045
          Length = 265

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 141 GTSRKASSWRRERMSAATVLAESAVMFSRVGAEHRYE 31
           G+ R    WRR   SAA VL  +A+ F   G    YE
Sbjct: 44  GSERHGRRWRRFWTSAAGVLRSTAIRFLSRGGSRDYE 80


>09_03_0041 +
           11826788-11828002,11828101-11828563,11828668-11828798,
           11829227-11829577,11829723-11829879,11829968-11830260,
           11830367-11830426,11830530-11830619,11830774-11830857
          Length = 947

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 177 PPHSRAALKTFPGTSRKASSWRRERMSAATVLAESAVMFS 58
           PPH+ +    FP T R   S R  R +AA   A + V  S
Sbjct: 8   PPHALSPKPPFPSTLRSTRSLRLRRATAAAAAAGAGVSSS 47


>12_01_0592 + 4848467-4849164,4849413-4849491
          Length = 258

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 46  GPDPAEHDRRLGQHRR-GAHXXXXXXXXXXRRTRESF 153
           GP  + HD+R+G  R+ GAH          +R ++++
Sbjct: 199 GPGDSAHDQRMGAERKEGAHLRHSQSEADTKRAKQAY 235


>08_02_1540 + 27694565-27694579,27696364-27696447,27696599-27696731,
            27696840-27696951,27697530-27697629,27697810-27697937,
            27698046-27698115,27698548-27698636,27698719-27698764,
            27698854-27698924,27699002-27699075,27699341-27699433,
            27699539-27699572,27699704-27699789,27702147-27702223,
            27702445-27702533,27702630-27702813,27703068-27703249,
            27703962-27704064,27704159-27704490,27704577-27705018,
            27705749-27705846,27706988-27707081,27707666-27707787,
            27708025-27708078,27708185-27708304,27708595-27708799,
            27708889-27709059,27709155-27709310,27709375-27709431,
            27709474-27709580,27709708-27709798,27709931-27710072,
            27710149-27710305,27710400-27710516,27710596-27710722,
            27710844-27711066,27711460-27711466,27711656-27711788
          Length = 1574

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 11   WQTPLSTSYRCSAPTRLNMTADSASTVAALILS 109
            WQ   S  +R   P + N+T+    T+ A+ LS
Sbjct: 1108 WQITPSDEFRTGGPVKQNLTSHVGPTMLAMFLS 1140


>08_02_0493 -
           17770723-17770758,17770772-17770996,17771051-17772033,
           17772196-17772720,17772801-17772990
          Length = 652

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 86  CWPSLRSCSAGSGPST 39
           CWP+ R C AG  PS+
Sbjct: 69  CWPAWRECGAGCLPSS 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,209,481
Number of Sequences: 37544
Number of extensions: 191697
Number of successful extensions: 717
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)