Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M20
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    29   0.67 
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    27   1.5  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   2.0  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   2.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   3.6  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    26   4.7  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   4.7  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    25   6.2  

>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 365 SVKSTWSTVMLLNTETSSAPDTGSPRLIFRNSSTTNSGGTLR-RTSTSARAF 213
           S KST++    + T+++SAP   S  L+   +   +S  T R R +T ARAF
Sbjct: 448 SPKSTYAIYFEVATQSASAPQGDSRGLVQYLTLYQHSSNTFRLRVTTVARAF 499


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 502 YLYMTSVGLVFFSYWTNVSAIKQIQTLTL 588
           YL  T V  V  S WTN+S  K + T  L
Sbjct: 627 YLATTHVDQVGISLWTNLSMFKHVSTKAL 655


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = -3

Query: 356 STWSTVMLLNTETSSAP-DTGSPRLIFRNSSTTNSGGTL 243
           ST  T +  +T+T++A  +TG+      N++TTN+GG+L
Sbjct: 534 STPGTGLFGSTQTNNATSNTGTGLFGSNNANTTNTGGSL 572


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +1

Query: 274  FLKISLGLPVSGAEEVSVLSNITVDHVDLTDADSNYYDANFYNAFIFTLLKFLVCCLGCM 453
            FL     L + G   ++V +N+ + H    +    Y    ++   I+TL   L C L  +
Sbjct: 901  FLIFLYFLFIIGGIGMNVGTNVWLKHWSEVNTQLGYNPKPYFYLGIYTLFGLLSCALISL 960

Query: 454  SALCIFVW 477
            S+L I V+
Sbjct: 961  SSLTITVF 968


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = -3

Query: 356 STWSTVMLLNTETSSAPDTGSPRLIFRNSSTTNSGGTLRRTSTSARAFDLNDIIHLCKTS 177
           ST S   +    TSS   + S      ++STT S  + R++S+S+ +F  +  I   K+S
Sbjct: 726 STSSGTEIKTASTSSGSSSSSSYTPASSTSTTTSSVSSRQSSSSS-SFTPSSAISTAKSS 784

Query: 176 HTVSLI 159
             +S +
Sbjct: 785 FVLSTL 790


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 253 PLFVVDEFLKISLGLPVSGAEEVSVLSNITVDHVDLTD 366
           PL+V D++ ++     +   EE+S +SNIT  H D  D
Sbjct: 464 PLWVSDDYEEVVCIGSIKELEELSGVSNITDIHRDSID 501


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 528 GILFVLDKRVSHQANTDTHVD 590
           GILF L  R++   N DT+VD
Sbjct: 243 GILFQLAARLARYTNNDTYVD 263


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 282 LQELIHNKQWWHPQKNLHKCQSL 214
           LQE + ++  +HP++N+HK   L
Sbjct: 70  LQEFLDDEVAYHPEENVHKVVGL 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,111,761
Number of Sequences: 5004
Number of extensions: 39293
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)