Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M18
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    69   3e-13
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    63   2e-11
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    59   3e-10
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    29   0.37 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    28   0.84 
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    27   1.9  
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    25   5.9  

>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 69.3 bits (162), Expect = 3e-13
 Identities = 32/54 (59%), Positives = 47/54 (87%)
 Frame = -2

Query: 439 GRQSVPPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 278
           G+QS  P+A+D+E +LS+VGIEA++E+++ +ISELNGKN+EELI AG  KLS++
Sbjct: 14  GKQS--PSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTV 65



 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 474 MRYVAAYLLAVLDGKASP 421
           M+Y+AAYLL  + GK SP
Sbjct: 1   MKYLAAYLLLTVGGKQSP 18


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 63.3 bits (147), Expect = 2e-11
 Identities = 26/48 (54%), Positives = 43/48 (89%)
 Frame = -2

Query: 421 PAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 278
           P+A+D+E +LS+VGIEA+SE+++ +I+ELNGK+++ELI AG  KL+++
Sbjct: 18  PSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATV 65



 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 474 MRYVAAYLLAVLDGKASP 421
           M+Y+AAYLL  + GK SP
Sbjct: 1   MKYLAAYLLLTVGGKDSP 18


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 59.3 bits (137), Expect = 3e-10
 Identities = 24/48 (50%), Positives = 42/48 (87%)
 Frame = -2

Query: 421 PAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 278
           P+A+D+E +LS+VGIE++SE+++ +I EL+GK+++ELI AG  KL+++
Sbjct: 18  PSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATV 65



 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 474 MRYVAAYLLAVLDGKASP 421
           M+Y+AAYLL  + GK SP
Sbjct: 1   MKYLAAYLLLTVGGKNSP 18


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 403 EKILSSVGIEADSEKLKKVISELNGKNVEELI 308
           E +L S G+E  S+   KV S +N K+VEE I
Sbjct: 297 ELVLLSEGVEMYSDDWAKVASHVNTKSVEECI 328


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 406  VEKILSSVGIEADSEKLKKVISELNG 329
            V++I   VG+E DSE  K  + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 439 GRQSVPPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEA 302
           G Q V P A + + +L       DS+    V+S    K+ +ELI+A
Sbjct: 128 GYQEVKPYAVNWDNVLKEEEEGKDSQDDPSVLSHKRNKSSKELIDA 173


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 409 DVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSS 281
           DV++ LS +  EA    +       NG+ +EE++ A   KL +
Sbjct: 56  DVDQ-LSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEA 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,409,862
Number of Sequences: 5004
Number of extensions: 19974
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)