Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M18
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161     55   3e-08
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129           48   4e-06
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764...    47   7e-06
01_06_0098 - 26416768-26416998                                         36   0.017
07_03_0321 + 16757414-16757743                                         30   1.1  
07_01_1001 - 8460467-8460799                                           30   1.1  
08_02_0909 - 22515326-22515418,22515992-22516150,22516583-225166...    27   7.8  

>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
          Length = 113

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 24/48 (50%), Positives = 38/48 (79%)
 Frame = -2

Query: 421 PAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 278
           P+A D++ IL SVG+EA+ E+L+ ++SEL GK++ E+I AGR K +S+
Sbjct: 18  PSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFASV 65



 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -3

Query: 474 MRYVAAYLLAVLDGKASP 421
           M+ +AAYLLAVL G  SP
Sbjct: 1   MKLIAAYLLAVLGGNTSP 18


>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
          Length = 114

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 21/48 (43%), Positives = 34/48 (70%)
 Frame = -2

Query: 421 PAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 278
           P A D+  IL SVG E D+ K++ ++S+++GK++ ELI  GR K +S+
Sbjct: 18  PTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGREKFASV 65


>02_04_0074 -
           19474786-19474812,19475174-19475400,19476362-19476496,
           19478662-19479193
          Length = 306

 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 21/48 (43%), Positives = 34/48 (70%)
 Frame = -2

Query: 421 PAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 278
           P+A D+  IL SVG E D  K++ ++S+L GK++ E+I +GR K +S+
Sbjct: 211 PSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGREKFASV 258


>01_06_0098 - 26416768-26416998
          Length = 76

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 21/48 (43%), Positives = 27/48 (56%)
 Frame = -2

Query: 466 RGRVFTRRVGRQSVPPAAADVEKILSSVGIEADSEKLKKVISELNGKN 323
           RG   T R G    PPA   V KI+ +V IEADS + K ++  L GK+
Sbjct: 4   RGADETTRHGPPPPPPA---VVKIIETVHIEADSAEFKSIVQRLTGKD 48


>07_03_0321 + 16757414-16757743
          Length = 109

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -3

Query: 474 MRYVAAYLLAVLDGKASP 421
           MR+VAAYL+A + G ASP
Sbjct: 1   MRFVAAYLMATIGGNASP 18


>07_01_1001 - 8460467-8460799
          Length = 110

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -3

Query: 474 MRYVAAYLLAVLDGKASP 421
           MR+VAAYL+A + G ASP
Sbjct: 1   MRFVAAYLMATIGGNASP 18


>08_02_0909 -
           22515326-22515418,22515992-22516150,22516583-22516658,
           22517980-22518141,22518826-22519259,22519723-22521414
          Length = 871

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = -2

Query: 400 KILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSS 281
           ++LS  GI++ S K    +  ++G N++EL  AG  +L+S
Sbjct: 674 EVLSMSGIQSVSNKFVNELIPVHGSNLKELAFAGCLQLTS 713


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,906,045
Number of Sequences: 37544
Number of extensions: 150985
Number of successful extensions: 445
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)