Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M17
         (459 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   1.0  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   2.4  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   2.4  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   3.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.3  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = -2

Query: 83  CGGTAAPT--GIYPCQGCRAY 27
           CG  A+    G+Y C+GC+ +
Sbjct: 89  CGDRASGKHYGVYSCEGCKGF 109


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 392 RLARYYQTKSVLPPNWK 442
           RL  Y  T+SVL  +WK
Sbjct: 159 RLRMYINTESVLDGDWK 175


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 208 LCNTMRVPEHDTDLGRSKTLFAKFEDLFL 122
           +CN+    E +T     +T+FA F D  +
Sbjct: 444 ICNSFTKFEFNTVFNDQRTVFANFYDAMI 472


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 21  WVVCTAPLARVYPSRRCRTAAVSLPG 98
           WV CT    R    R  RT  V  PG
Sbjct: 193 WVYCTRYSDRPSSGRSPRTRRVKKPG 218


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 58  PVGAAVPPQCP 90
           PVG A+PP  P
Sbjct: 120 PVGVALPPTLP 130


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,391
Number of Sequences: 336
Number of extensions: 2427
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10511300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)