Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_M17
(459 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce... 226 1e-60
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 31 0.11
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|... 28 0.79
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha... 28 0.79
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 27 1.4
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 26 3.2
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 4.2
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 4.2
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 25 5.6
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 25 7.3
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 7.3
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 24 9.7
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 24 9.7
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 24 9.7
SPBC215.11c |||aldo/keto reductase, unknown biological role|Schi... 24 9.7
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 24 9.7
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 24 9.7
>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 226 bits (553), Expect = 1e-60
Identities = 107/146 (73%), Positives = 121/146 (82%)
Frame = +2
Query: 20 MGRMHGTLGKGISQSALPYRRSVPTWVKLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHG 199
MGRMH GKGI+ SALPY RS P W K AD + EQI K KKG++PSQIGV LRDSHG
Sbjct: 1 MGRMHSK-GKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHG 59
Query: 200 VAQVRFGTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 379
+ QVRF TG+KI+RI+KA GLAP+LPEDLY LIKKAV++RKHLERNRKDKDSKFRLIL+E
Sbjct: 60 IPQVRFITGQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIE 119
Query: 380 SRIHRLARYYQTKSVLPPNWKYESST 457
SRIHRLARYY+ LPP WKYES+T
Sbjct: 120 SRIHRLARYYRKVGALPPTWKYESAT 145
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 30.7 bits (66), Expect = 0.11
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = +2
Query: 209 VRFGTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRI 388
+R KK+ +KA G EDL +L + + + +++K RL ++ RI
Sbjct: 623 IRINEAKKLAEELKAKGGLEVNAEDLEHLDADKLRAMQIEQVEKQNKSMNERLRVIGKRI 682
Query: 389 HRLARYYQTKSVLPPNWKYES 451
L R Y+ +++ P W+ ++
Sbjct: 683 DHLERAYRREAI--PLWEEDA 701
>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 483
Score = 27.9 bits (59), Expect = 0.79
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +2
Query: 320 KHLERNRKDKDSKFRLILVESRIHRLARYYQTKS 421
K+ R +K+ D ++ +LVESR+H L R+ +K+
Sbjct: 32 KYQWREQKESD-EYDYVLVESRLHELRRHRLSKN 64
>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
Caf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 27.9 bits (59), Expect = 0.79
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Frame = +2
Query: 89 PTWVKLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFGTGKKILRIMKAMGLAP 268
P V ++DD Q + L QIG+ L D G A V T + L
Sbjct: 60 PLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACT----WQFNFTFNLQD 115
Query: 269 DL--PEDLYYLIKKAVAMRKHLE 331
D+ PE + L K + +KH E
Sbjct: 116 DMYAPESIELLTKSGIDFKKHQE 138
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 27.1 bits (57), Expect = 1.4
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +2
Query: 227 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 406
KKI+ I L D YYL KKA + + N +K+SK I +E + +
Sbjct: 183 KKIIDIFDQFPLLTKKYWD-YYLFKKAFLILEDANLNSFEKNSKLEEIRIEKKSLKQYSP 241
Query: 407 YQTKSVLPPNW 439
+ L +W
Sbjct: 242 VNLEKYLTKSW 252
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.8 bits (54), Expect = 3.2
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 296 IKKAVAMRKHLERNRKDKDSKFRLILVESRI-HRLARYYQTKSVLPPNWKYESS 454
+ K + K+ E + K + + F S H + QTKS LPPN SS
Sbjct: 95 VAKEIESSKNQETDAKSEQAPFTEDASSSNYAHHRSADSQTKSALPPNVPASSS 148
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 4.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 350 PCPSYYVPNVSSWRQPS*SGSTNLPVDQEQ 261
P PSY+ P S Q +GST L D +Q
Sbjct: 338 PAPSYFSPGSSFGAQLCANGSTLLRADTKQ 367
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 4.2
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +2
Query: 224 GKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDK 349
G+ + ++ A + PE+L+ +KK+ + +K + K K
Sbjct: 192 GRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPK 233
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 25.0 bits (52), Expect = 5.6
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 165 EGVRPFLPSLKICSLISSAVSFTQ 94
+ +RP +PS +C LI + ++Q
Sbjct: 13 KNIRPLIPSFHVCLLIMFLILYSQ 36
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 24.6 bits (51), Expect = 7.3
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 132 SSNLAKRVLLLPKSVSCSGTLMVLHKSDLVLVKRSCVS*KLWVLLLIYRKICTT 293
SS K L +V+C T++ L+ D VK+ +S + L++ CT+
Sbjct: 58 SSKNVKFEQKLDLAVTCLDTIVSLYAVDNEEVKKDVISCSCTIYPLVFLHCCTS 111
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 40 PWQGYIPVGAAVPPQCPYL 96
P YIPVG VP PY+
Sbjct: 593 PTMPYIPVGYPVPGYTPYM 611
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 24.2 bits (50), Expect = 9.7
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +1
Query: 196 WCCTSQIWYW*KDPAY 243
WC + Q+W+ + PAY
Sbjct: 513 WCISRQLWWGHRIPAY 528
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 24.2 bits (50), Expect = 9.7
Identities = 12/54 (22%), Positives = 26/54 (48%)
Frame = -3
Query: 271 IRSKTHSFHDTQDLFTSTKSDLCNTMRVPEHDTDLGRSKTLFAKFEDLFLNIIS 110
++++ D+ ++ K+ L + + TDLG L F+DL + ++S
Sbjct: 162 VKARYKEISDSLVAVSAEKTQLSEKVEKMKRSTDLGAEAVLPLDFQDLRVALLS 215
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Frame = +1
Query: 1 YNKKPQYGSYARHPW---QGYIPVG 66
Y+ P+ Y HP+ Q YIP+G
Sbjct: 242 YSDSPEANMYGSHPFYMEQRYIPIG 266
>SPBC215.11c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 24.2 bits (50), Expect = 9.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -1
Query: 141 SLKICSLISSAVSFTQVGTLRRYGSADWDIPLPRVPCIRPILRL 10
++K+ ++ + + F G +R G WD P + CI + RL
Sbjct: 17 TVKVGDMVVNRMGF---GAMRVTGDGIWDEPKDKEACIATLKRL 57
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 24.2 bits (50), Expect = 9.7
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +2
Query: 233 ILRIMKAMGLAPDLPEDLYYLIKKAVA 313
I R+ +++ + P+LP+D+ L+ K+ A
Sbjct: 469 IRRLRESISIIPNLPKDIQKLVIKSYA 495
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 24.2 bits (50), Expect = 9.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 236 LRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSK 358
LR+ K +G+ D K+ A ++ R+RK+KDSK
Sbjct: 1279 LRVQKELGILKT-ERDTSTNRKQGQASKQPQRRHRKEKDSK 1318
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,068,163
Number of Sequences: 5004
Number of extensions: 42476
Number of successful extensions: 126
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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