Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_M17
(459 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41534-2|AAB47594.1| 151|Caenorhabditis elegans Ribosomal prote... 227 4e-60
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ... 28 3.8
AF003130-11|AAM15579.1| 250|Caenorhabditis elegans Hypothetical... 27 6.6
AF003130-9|AAP68939.1| 307|Caenorhabditis elegans Hypothetical ... 27 6.6
Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical pr... 27 8.7
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 27 8.7
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 27 8.7
AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin ... 27 8.7
AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport... 27 8.7
>U41534-2|AAB47594.1| 151|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 13 protein.
Length = 151
Score = 227 bits (554), Expect = 4e-60
Identities = 104/146 (71%), Positives = 127/146 (86%)
Frame = +2
Query: 20 MGRMHGTLGKGISQSALPYRRSVPTWVKLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHG 199
MGRMH GKG+++SA+PYRRSVP+W K+TA+++++QI K+ KKGL PSQIGV+LRDSHG
Sbjct: 1 MGRMHNP-GKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHG 59
Query: 200 VAQVRFGTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 379
V QVR G KI RI+K+ G+AP+LPEDLY+L+KKAVA+RKHLER+RKD DSK+RLILVE
Sbjct: 60 VGQVRRLAGNKIFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVE 119
Query: 380 SRIHRLARYYQTKSVLPPNWKYESST 457
SRIHRLARYY+TK LPP WKYES T
Sbjct: 120 SRIHRLARYYKTKRQLPPTWKYESGT 145
>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
protein Y87G2A.5 protein.
Length = 1050
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 169 NRCHAQGLSWCCTSQIWYW*KDPAYHESY 255
NR WC + Q+W+ + PAY+ S+
Sbjct: 492 NRWLESSRDWCISRQLWWGHRIPAYYISF 520
>AF003130-11|AAM15579.1| 250|Caenorhabditis elegans Hypothetical
protein F55A12.2b protein.
Length = 250
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 168 WEGVRPFLPSLKICSLISSAVSF 100
WEG +P P + +C+ I VSF
Sbjct: 163 WEGSKPARPVIAMCAAIQMIVSF 185
>AF003130-9|AAP68939.1| 307|Caenorhabditis elegans Hypothetical
protein F55A12.2c protein.
Length = 307
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 168 WEGVRPFLPSLKICSLISSAVSF 100
WEG +P P + +C+ I VSF
Sbjct: 220 WEGSKPARPVIAMCAAIQMIVSF 242
>Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical
protein F44A6.1b protein.
Length = 467
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 278 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 403
EDL LI+K VA ++ RKD ++ + H+LA+
Sbjct: 165 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 206
>Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical
protein F44A6.1a protein.
Length = 453
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 278 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 403
EDL LI+K VA ++ RKD ++ + H+LA+
Sbjct: 165 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 206
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
protein C18C4.5b protein.
Length = 1046
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 254 MGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 400
M L+ P D+ L+ + +RK L+R + +K F + + S I +LA
Sbjct: 1 MWLSKQQPHDVNALLAEKQELRKQLDREQNEKQELF--MQINSMIAKLA 47
>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
protein C18C4.5a protein.
Length = 1022
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 254 MGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 400
M L+ P D+ L+ + +RK L+R + +K F + + S I +LA
Sbjct: 1 MWLSKQQPHDVNALLAEKQELRKQLDREQNEKQELF--MQINSMIAKLA 47
>AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin
protein.
Length = 456
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 278 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 403
EDL LI+K VA ++ RKD ++ + H+LA+
Sbjct: 168 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 209
>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
family protein 2 protein.
Length = 1551
Score = 26.6 bits (56), Expect = 8.7
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = +1
Query: 154 SYSFPNRCHAQGLSWCCTSQIWYW 225
+Y+ P C + W CT + W W
Sbjct: 715 TYNAPIYCGCEDFGWNCTLEDWKW 738
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,468,367
Number of Sequences: 27780
Number of extensions: 239985
Number of successful extensions: 608
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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