Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M16
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.45 
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    26   2.4  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    25   7.3  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   7.3  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    25   7.3  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    24   9.7  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    24   9.7  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    24   9.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    24   9.7  

>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 28.7 bits (61), Expect = 0.45
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +1

Query: 148 PRSFRSLNHQTGPS-GNYEPI--STGPAFVDFNHPNYPPKRYDNPLAR 282
           P+S+ + ++  G + G+Y P   ST P    + +P+YPP  Y    AR
Sbjct: 102 PQSYANQSYTYGNNFGSYPPTQPSTQPLPQSYGYPSYPPAGYRGGSAR 149


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 154 SFRSLNHQTGPSGNYEPISTGPAFVDFNHPN 246
           + + +N+ + PSG+ + +   P +VD  HP+
Sbjct: 500 NIKLINYTSSPSGSKKFVMWNPPYVDPKHPD 530


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 139 VANPRSFRSLNHQTG-PSGNYEPISTGPAFVDFNHPNYP 252
           V+  ++   LN++   P    +P S  P+F+D N P+ P
Sbjct: 293 VSKQKNITKLNNEKRIPPQLAQPTSHVPSFIDTNSPSMP 331


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 109 GTPLLSPRELCLRHPCQIPAKKNTRKLSLSNSRQS 5
           G  LLS  E  L  PC   A +N  K +LSN  +S
Sbjct: 405 GELLLSNIENHLWTPCGFAAVENLEKYTLSNRMES 439


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 310 YLYETFTSHHGREGCRIAWVDNWD 239
           Y+Y++      +   R  WV+NWD
Sbjct: 55  YIYKSNPGMEIKNAIRNGWVENWD 78


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 151 RSFRSLNHQTGPSGNYEPIS 210
           + + S NH +   GNY+P+S
Sbjct: 412 KKYWSRNHSSHSQGNYDPLS 431


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = -3

Query: 174 MVERTKGSRVRNTTRG-HYCRPMEHHYCHHVNSVCGTHAKYRRRRTHES 31
           +  RT   +   T R  ++ R   HH+  H  S  G H +  R  + E+
Sbjct: 6   LTNRTSTHKFNETDRETNHSRRHRHHHSRHRESKHGRHDRSERPSSREA 54


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 334 ISPSFKIAYLYETFTSHHGREGC 266
           +SP+F   +L ET+  H G + C
Sbjct: 316 VSPAFCPDFLIETYLDHAGEKFC 338


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 358 ENIIRLIIISPSFKIAYLYETFTSHHGREGCRIAW 254
           +N   +I +  SF   Y  +  TS HG+   R AW
Sbjct: 770 KNTTAVIDVDSSFCRNYSEDASTSLHGQTAGRFAW 804


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,004
Number of Sequences: 5004
Number of extensions: 40976
Number of successful extensions: 89
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)