Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_M16
(458 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0838 - 6360232-6360460,6360571-6360719,6360825-6360933,636... 31 0.45
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 31 0.45
03_02_0269 + 7001891-7002212,7003598-7004037 28 3.1
09_04_0176 + 15361766-15362836 28 4.2
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656... 28 4.2
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 27 5.5
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 27 7.3
09_04_0472 - 17895285-17896459,17897113-17897271,17897374-178977... 27 9.6
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 27 9.6
>06_01_0838 -
6360232-6360460,6360571-6360719,6360825-6360933,
6361446-6362276,6362865-6362969,6363084-6363180,
6363303-6363341,6363435-6363477
Length = 533
Score = 31.1 bits (67), Expect = 0.45
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = -3
Query: 186 RTRLMVERTKGSRVRNTTRGHYCRPMEHHYCHHVNSVCGTHAKYRRRRTHESFHCRIV 13
+ +L++ER G R G C + Y H+ ++ G AK +++R ++ RI+
Sbjct: 406 KDQLLIEREAGRVFRGWNEGKICFAPTYKYTHNSDAYAGETAKSKKKRRTPAWCDRIL 463
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 31.1 bits (67), Expect = 0.45
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = -3
Query: 285 TTGERVVVSLGWIIGMIEIDERRSSAYGFIISARTRLMVERTKG-SRVRNTTRGHYCRPM 109
+TG +V + L W++G E R +A G++ +R V+ G + N + G P
Sbjct: 233 STGGKVPLVLDWVVGKKTCREARRNATGYMCVSRDSECVDSRNGPGYLCNCSAGFEGNPY 292
Query: 108 EHHYCHHVNSVCGTHAKY 55
C +N + KY
Sbjct: 293 LLDGCQDINECEDSRFKY 310
>03_02_0269 + 7001891-7002212,7003598-7004037
Length = 253
Score = 28.3 bits (60), Expect = 3.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 289 SHHGREGCRIAWVDNWDD*NRR 224
+ H R+ R+AW D W D +R+
Sbjct: 62 TEHARQRMRVAWADGWVDGSRK 83
>09_04_0176 + 15361766-15362836
Length = 356
Score = 27.9 bits (59), Expect = 4.2
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +3
Query: 72 RKQSSRGDNSGVPSDGN---SDHVWCCEPAILSFSQPSDGS*RKL-*THKHWTGVRR 230
R SS +NS P GN S+H W A + + PS+G+ R HW V+R
Sbjct: 173 RLMSSWLNNSVDPIKGNDKKSEHYWKAVAAEFNTNMPSNGNKRTAKQCRTHWDNVKR 229
>01_05_0142 -
18564697-18564792,18564824-18564928,18565606-18565678,
18566262-18567637
Length = 549
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 126 HYCRPMEHHYCHHVNSVCGTHAKYRRR 46
H C ME HY +NS C + + R+
Sbjct: 444 HVCHAMEEHYQSRINSECNSIVTHWRK 470
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 27.5 bits (58), Expect = 5.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 247 YPPKRYDNPLARGGK 291
YPPKRY NP+ G+
Sbjct: 859 YPPKRYSNPVGPAGR 873
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 27.1 bits (57), Expect = 7.3
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 DNSDDYSTMKAFVCSSSPVFGMGAANRVHVVTIVVFHRTAIVTTCGVANPRSFRSLNHQT 180
D ++ + A V S SP + AA R VF TT NP + + N
Sbjct: 211 DKGRRWTGVLAEVASPSPRRELAAAARTTARD--VFAPVTNPTTTPATNPVTVPATNPAM 268
Query: 181 GP--SGNYEPISTGPAFVDFNHPNYPP 255
P G ST PA N+PN PP
Sbjct: 269 NPVTPGIVTVPSTNPATGYSNNPNLPP 295
>09_04_0472 -
17895285-17896459,17897113-17897271,17897374-17897794,
17898520-17898552,17898902-17899384
Length = 756
Score = 26.6 bits (56), Expect = 9.6
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -3
Query: 264 VSLGWIIGMIEID--ERRSSAYGFIISARTRLMVERTKGSRVRNTTRGHYCRPMEHHYCH 91
VSL WII M D +R +++Y IS ++R V+ KG + G+ P C
Sbjct: 255 VSLDWIITMDSCDRVKRNTTSYA-CISGKSR-CVDDPKGGYRCKCSDGYEGNPYVKDGCK 312
Query: 90 HVNSVCGTHAKY 55
+N C +A Y
Sbjct: 313 DINE-CLDNATY 323
>06_03_1283 -
28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/38 (28%), Positives = 14/38 (36%)
Frame = -3
Query: 135 TRGHYCRPMEHHYCHHVNSVCGTHAKYRRRRTHESFHC 22
T H C EH +C ++ T HE HC
Sbjct: 846 TNDHACHGHEHSHCEEPVALHSTGEHACHEHEHEHIHC 883
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,367,679
Number of Sequences: 37544
Number of extensions: 264437
Number of successful extensions: 674
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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