Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M16
         (458 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC050718-1|AAH50718.1|  472|Homo sapiens POLK protein protein.         30   4.4  
AY769932-1|AAV80830.1|  461|Homo sapiens polymerase kappa isofor...    30   4.4  
AY769931-1|AAV80829.1|  371|Homo sapiens polymerase kappa isofor...    30   4.4  
AY769930-1|AAV80828.1|  489|Homo sapiens polymerase kappa isofor...    30   4.4  
AY769929-1|AAV80827.1|  780|Homo sapiens polymerase kappa isofor...    30   4.4  
AY273797-1|AAP12648.1|  870|Homo sapiens polymerase (DNA directe...    30   4.4  
AF194973-1|AAF23270.1|  870|Homo sapiens DINP protein protein.         30   4.4  
AF163570-1|AAF02540.1|  870|Homo sapiens DINB protein protein.         30   4.4  
AB209291-1|BAD92528.1|  790|Homo sapiens polymerase (DNA directe...    30   4.4  
AB027564-1|BAA86943.1|  870|Homo sapiens DINB1 protein.                30   4.4  
BC146668-1|AAI46669.1|  261|Homo sapiens claudin 18 protein.           29   7.7  
BC142708-1|AAI42709.1|  261|Homo sapiens claudin 18 protein.           29   7.7  
AY358479-1|AAQ88843.1|  261|Homo sapiens CLDN18 protein.               29   7.7  
AK091659-1|BAC03714.1|  372|Homo sapiens protein ( Homo sapiens ...    29   7.7  
AF221069-1|AAF26448.1|  261|Homo sapiens Claudin-18 protein.           29   7.7  

>BC050718-1|AAH50718.1|  472|Homo sapiens POLK protein protein.
          Length = 472

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 37  VCSSSPVFGMGAANRVHVVTIVVFHRTAIVTTCGVA-NPRSFRSLNHQTGPSGNYEPIST 213
           +  +S VFG  A   V  +   +  +T +  + G+A N    +  + +  P+G Y+ +  
Sbjct: 279 ILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN 338

Query: 214 GPAFVDF 234
             A +DF
Sbjct: 339 RQAVMDF 345


>AY769932-1|AAV80830.1|  461|Homo sapiens polymerase kappa isoform 4
           protein.
          Length = 461

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 37  VCSSSPVFGMGAANRVHVVTIVVFHRTAIVTTCGVA-NPRSFRSLNHQTGPSGNYEPIST 213
           +  +S VFG  A   V  +   +  +T +  + G+A N    +  + +  P+G Y+ +  
Sbjct: 279 ILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN 338

Query: 214 GPAFVDF 234
             A +DF
Sbjct: 339 RQAVMDF 345


>AY769931-1|AAV80829.1|  371|Homo sapiens polymerase kappa isoform 3
           protein.
          Length = 371

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 37  VCSSSPVFGMGAANRVHVVTIVVFHRTAIVTTCGVA-NPRSFRSLNHQTGPSGNYEPIST 213
           +  +S VFG  A   V  +   +  +T +  + G+A N    +  + +  P+G Y+ +  
Sbjct: 189 ILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN 248

Query: 214 GPAFVDF 234
             A +DF
Sbjct: 249 RQAVMDF 255


>AY769930-1|AAV80828.1|  489|Homo sapiens polymerase kappa isoform 2
           protein.
          Length = 489

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 37  VCSSSPVFGMGAANRVHVVTIVVFHRTAIVTTCGVA-NPRSFRSLNHQTGPSGNYEPIST 213
           +  +S VFG  A   V  +   +  +T +  + G+A N    +  + +  P+G Y+ +  
Sbjct: 279 ILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN 338

Query: 214 GPAFVDF 234
             A +DF
Sbjct: 339 RQAVMDF 345


>AY769929-1|AAV80827.1|  780|Homo sapiens polymerase kappa isoform 1
           protein.
          Length = 780

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 37  VCSSSPVFGMGAANRVHVVTIVVFHRTAIVTTCGVA-NPRSFRSLNHQTGPSGNYEPIST 213
           +  +S VFG  A   V  +   +  +T +  + G+A N    +  + +  P+G Y+ +  
Sbjct: 189 ILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN 248

Query: 214 GPAFVDF 234
             A +DF
Sbjct: 249 RQAVMDF 255


>AY273797-1|AAP12648.1|  870|Homo sapiens polymerase (DNA directed)
           kappa protein.
          Length = 870

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 37  VCSSSPVFGMGAANRVHVVTIVVFHRTAIVTTCGVA-NPRSFRSLNHQTGPSGNYEPIST 213
           +  +S VFG  A   V  +   +  +T +  + G+A N    +  + +  P+G Y+ +  
Sbjct: 279 ILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN 338

Query: 214 GPAFVDF 234
             A +DF
Sbjct: 339 RQAVMDF 345


>AF194973-1|AAF23270.1|  870|Homo sapiens DINP protein protein.
          Length = 870

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 37  VCSSSPVFGMGAANRVHVVTIVVFHRTAIVTTCGVA-NPRSFRSLNHQTGPSGNYEPIST 213
           +  +S VFG  A   V  +   +  +T +  + G+A N    +  + +  P+G Y+ +  
Sbjct: 279 ILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN 338

Query: 214 GPAFVDF 234
             A +DF
Sbjct: 339 RQAVMDF 345


>AF163570-1|AAF02540.1|  870|Homo sapiens DINB protein protein.
          Length = 870

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 37  VCSSSPVFGMGAANRVHVVTIVVFHRTAIVTTCGVA-NPRSFRSLNHQTGPSGNYEPIST 213
           +  +S VFG  A   V  +   +  +T +  + G+A N    +  + +  P+G Y+ +  
Sbjct: 279 ILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN 338

Query: 214 GPAFVDF 234
             A +DF
Sbjct: 339 RQAVMDF 345


>AB209291-1|BAD92528.1|  790|Homo sapiens polymerase (DNA directed)
           kappa variant protein.
          Length = 790

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 37  VCSSSPVFGMGAANRVHVVTIVVFHRTAIVTTCGVA-NPRSFRSLNHQTGPSGNYEPIST 213
           +  +S VFG  A   V  +   +  +T +  + G+A N    +  + +  P+G Y+ +  
Sbjct: 199 ILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN 258

Query: 214 GPAFVDF 234
             A +DF
Sbjct: 259 RQAVMDF 265


>AB027564-1|BAA86943.1|  870|Homo sapiens DINB1 protein.
          Length = 870

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 37  VCSSSPVFGMGAANRVHVVTIVVFHRTAIVTTCGVA-NPRSFRSLNHQTGPSGNYEPIST 213
           +  +S VFG  A   V  +   +  +T +  + G+A N    +  + +  P+G Y+ +  
Sbjct: 279 ILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN 338

Query: 214 GPAFVDF 234
             A +DF
Sbjct: 339 RQAVMDF 345


>BC146668-1|AAI46669.1|  261|Homo sapiens claudin 18 protein.
          Length = 261

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 15  LFDNESFRVFFFAGIWHGCRKQSS 86
           L+DN    VF + G+W  C +QSS
Sbjct: 35  LYDNPVTSVFQYEGLWRSCVRQSS 58


>BC142708-1|AAI42709.1|  261|Homo sapiens claudin 18 protein.
          Length = 261

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 15  LFDNESFRVFFFAGIWHGCRKQSS 86
           L+DN    VF + G+W  C +QSS
Sbjct: 35  LYDNPVTSVFQYEGLWRSCVRQSS 58


>AY358479-1|AAQ88843.1|  261|Homo sapiens CLDN18 protein.
          Length = 261

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 15  LFDNESFRVFFFAGIWHGCRKQSS 86
           L+DN    VF + G+W  C +QSS
Sbjct: 35  LYDNPVTSVFQYEGLWRSCVRQSS 58


>AK091659-1|BAC03714.1|  372|Homo sapiens protein ( Homo sapiens
           cDNA FLJ34340 fis, clone FEBRA2009754, highly similar to
           Homo sapiens DINB protein (DINB1) mRNA. ).
          Length = 372

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 37  VCSSSPVFGMGAANRVHVVTIVVFHRTAIVTTCGVA-NPRSFRSLNHQTGPSGNYEPIST 213
           +  +S VFG  A   V  +   +  +T +  + G+A N    +  + +  P+G Y+ +  
Sbjct: 189 ILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN 248

Query: 214 GPAFVDF 234
             A +DF
Sbjct: 249 RQAGMDF 255


>AF221069-1|AAF26448.1|  261|Homo sapiens Claudin-18 protein.
          Length = 261

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 15  LFDNESFRVFFFAGIWHGCRKQSS 86
           L+DN    VF + G+W  C +QSS
Sbjct: 35  LYDNPVTSVFQYEGLWRSCVRQSS 58


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,513,589
Number of Sequences: 237096
Number of extensions: 1479738
Number of successful extensions: 7576
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7575
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3872123864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)