Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M14
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   1.5  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    27   2.6  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr ...    26   4.5  
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1...    25   5.9  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    25   5.9  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   7.8  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   7.8  

>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -1

Query: 294  ARKTKLHTVHGFLSKKNPIKYNAMNITCVFTSAGFTGFGI 175
            A+ TKL +VH  +S   P+  N +NI+ +  +AG  G G+
Sbjct: 888  AKVTKLLSVH--ISALLPVGSNELNISPLTQTAGILGIGL 925


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 270 VHGFLSKKNPIKYNAMNITCVFTSAGFTGFGIRSTGMS 157
           + G + K  P +++      VFT+AGF+  G    G++
Sbjct: 256 IGGKIIKNKPFRHSFKGFCSVFTTAGFSFSGTEVVGLA 293


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 87  ISPCVAIDIFR*INYYFMATNYETYDTKL 1
           IS  + +DI R I  YF+ ++ E YD KL
Sbjct: 548 ISLYITMDIVRSIQSYFIFSDREMYDEKL 576


>SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +2

Query: 140 MYCLQWLIPVLLIPKPVNPALVNTHVMFMALYLIGFFLERKPCTVCSFV 286
           M CL++ IP+LL+    N A       F  ++++     + PC  C  +
Sbjct: 1   MLCLRYFIPMLLV---ANAA----PYFFYPIFMLSMIARKYPCPYCMII 42


>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 283

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 217 NVHGIVFNRIFLRKETMYRVQFCFSS 294
           N + +VFN I L + TM+ V+ C  S
Sbjct: 170 NYNTVVFNGITLERSTMHGVETCGGS 195


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 209 THVMFMALYLIGFFLERKPCTVCSFVFLATVILICYSGI 325
           T+ + +  Y+IGF +     T+ ++V  +  I I  SG+
Sbjct: 152 TYTLVLLFYVIGFIVVASSSTISAYVIGSVFISIGSSGL 190


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 25  VRGHKIIVYLSKNVDCNTRTDLR*PNTIIFP 117
           VRG   +V LS+    NT+ D   PN  ++P
Sbjct: 157 VRGSSFLVSLSQKEWNNTQFDFLKPNNALYP 187


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 529 QQEKYNLFTKDFLNTLQKTG 470
           Q +KYN+F + FL  L K G
Sbjct: 223 QSKKYNMFEEGFLAKLHKPG 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,081
Number of Sequences: 5004
Number of extensions: 57198
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)