Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M14
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0185 + 12419956-12420001,12420133-12421373                       30   1.5  
04_03_0184 + 12395349-12395542,12396821-12397467,12398119-123986...    29   2.6  
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435...    28   6.0  
04_04_0978 - 29856872-29858023                                         28   6.0  

>04_03_0185 + 12419956-12420001,12420133-12421373
          Length = 428

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 226 GIVFNRIFLRKETMYRVQFCFSSNGNTYML*WDRKL-LVLDSV*WREIRHLNTSEINSEC 402
           G+V   + LRKE ++  +     N + Y L W++K+ L+ D V  + +      EIN+  
Sbjct: 280 GVVLIELLLRKEPIFTSETGMKQNLSNYFL-WEKKVKLIRDIVADQVLEEATEEEINNVA 338

Query: 403 NL 408
           +L
Sbjct: 339 SL 340


>04_03_0184 +
           12395349-12395542,12396821-12397467,12398119-12398655,
           12399087-12399239,12399315-12399809,12400032-12400555
          Length = 849

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
 Frame = +1

Query: 145 LFAMAHSGAS-----DTEACEPGTREYARNVH--GIVFNRIFLRKETMYRVQFCFSSNGN 303
           LF   H+ AS     D E    G      +V+  G+V   + LRKE ++  +     N +
Sbjct: 667 LFGTLHADASTFGYLDPEYYHTGQLNKKSDVYSFGVVLIELLLRKEPIFTSETGLKQNLS 726

Query: 304 TYML*WDRKL-LVLDSV*WREIRHLNTSEINSECNL 408
            Y L W++K+ L+ D V  + +      EI++  +L
Sbjct: 727 NYFL-WEKKVKLIRDIVADQVLEEATEEEIHTVASL 761


>08_01_0501 +
           4345522-4345720,4346598-4347167,4347294-4347366,
           4351133-4353092,4353465-4353840,4353932-4354326,
           4354597-4354765,4355444-4355518,4357699-4357826,
           4357988-4358213,4358290-4358417,4358505-4358768
          Length = 1520

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 208 IHECRVHRLRYQKHRNE 158
           I ECRVHRL  + H NE
Sbjct: 530 ISECRVHRLCVKNHNNE 546


>04_04_0978 - 29856872-29858023
          Length = 383

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +2

Query: 98  PTR*SSQTDIALCDMYCLQWLIPVLLIPKPVNPA 199
           PTR  SQ    LC MYC QW   +   P P + A
Sbjct: 13  PTRDCSQ---GLCSMYCPQWCYFIFPPPPPFDVA 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,342,873
Number of Sequences: 37544
Number of extensions: 317554
Number of successful extensions: 598
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)