Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M14
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025727-5|AAG23385.2|   89|Caenorhabditis elegans Hypothetical ...    94   6e-20
AB042633-1|BAA95694.1|   89|Caenorhabditis elegans bladder cance...    94   6e-20
U34596-1|AAA97605.1|  570|Caenorhabditis elegans SMA-4 protein.        31   0.58 
U00066-5|AAA50739.2|  565|Caenorhabditis elegans Small protein 4...    31   0.58 
Z83123-4|CAB05608.1|  316|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z83123-1|CAB05607.1|  316|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z47745-1|CAA87663.1|  358|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z75545-2|CAA99885.1|  327|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z82283-3|CAB05283.1|  485|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U23511-7|AAC46795.1|  435|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U21324-6|AAA62562.1|  287|Caenorhabditis elegans Hypothetical pr...    27   7.2  
L14324-7|AAA28181.2|  565|Caenorhabditis elegans Prolyl carboxy ...    27   7.2  

>AC025727-5|AAG23385.2|   89|Caenorhabditis elegans Hypothetical
           protein Y73E7A.6 protein.
          Length = 89

 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 38/72 (52%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
 Frame = +2

Query: 140 MYCLQWLIPVLLIPKP-VNPALVNTHVMFMALYLIGFFLERKPCTVCSFVFLATVILICY 316
           MYCLQWLIPVLLIPK  ++P  +    +FM  Y++GFFLER+PC +CS +F   + L+CY
Sbjct: 1   MYCLQWLIPVLLIPKHWIHPMFLVEQAVFMWFYIVGFFLERRPCHICSGIFFIALSLLCY 60

Query: 317 SGIGNCLFWTQC 352
           S   +C+FW  C
Sbjct: 61  SDPDSCIFWPTC 72


>AB042633-1|BAA95694.1|   89|Caenorhabditis elegans bladder cancer
           related protein protein.
          Length = 89

 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 38/72 (52%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
 Frame = +2

Query: 140 MYCLQWLIPVLLIPKP-VNPALVNTHVMFMALYLIGFFLERKPCTVCSFVFLATVILICY 316
           MYCLQWLIPVLLIPK  ++P  +    +FM  Y++GFFLER+PC +CS +F   + L+CY
Sbjct: 1   MYCLQWLIPVLLIPKHWIHPMFLVEQAVFMWFYIVGFFLERRPCHICSGIFFIALSLLCY 60

Query: 317 SGIGNCLFWTQC 352
           S   +C+FW  C
Sbjct: 61  SDPDSCIFWPTC 72


>U34596-1|AAA97605.1|  570|Caenorhabditis elegans SMA-4 protein.
          Length = 570

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 300 TVARKTKLHTVHGFLSKKNPIKYNAMNITCVFT 202
           T++   +  + +GFL    P  YN  NI+CVFT
Sbjct: 77  TISTLDEASSFNGFLIPSQPSSYNNNNISCVFT 109


>U00066-5|AAA50739.2|  565|Caenorhabditis elegans Small protein 4,
           isoform a protein.
          Length = 565

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 300 TVARKTKLHTVHGFLSKKNPIKYNAMNITCVFT 202
           T++   +  + +GFL    P  YN  NI+CVFT
Sbjct: 72  TISTLDEASSFNGFLIPSQPSSYNNNNISCVFT 104


>Z83123-4|CAB05608.1|  316|Caenorhabditis elegans Hypothetical
           protein T04A11.5 protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 119 TDIALCDMYCLQWLIPVLLIPKPVNPALVNTHVMF 223
           TD   C  + L+W  P   +P   +  L  +HV+F
Sbjct: 58  TDFKTCSQFSLRWFTPKTEVPLCGHATLATSHVLF 92


>Z83123-1|CAB05607.1|  316|Caenorhabditis elegans Hypothetical
           protein T04A11.2 protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 119 TDIALCDMYCLQWLIPVLLIPKPVNPALVNTHVMF 223
           TD   C  + L+W  P   +P   +  L  +HV+F
Sbjct: 58  TDFKTCSQFSLRWFTPKTEVPLCGHATLATSHVLF 92


>Z47745-1|CAA87663.1|  358|Caenorhabditis elegans Hypothetical
           protein T19H5.2 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 19  FIVRGHKIIVYLSKNVDCNTRTDLR*PNTIIFPNGYSTLRHVLFAMA 159
           FI+R H +    S+N D N+ + L     + F  G S+L++ +FA A
Sbjct: 57  FIIRSH-LHQISSRNQDTNSISALLNKQGVTFVKGMSSLKYKIFAFA 102


>Z75545-2|CAA99885.1|  327|Caenorhabditis elegans Hypothetical
           protein K10D3.3 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 175 QKHRNEPLQTIHVAECYIRLG 113
           +K   EPLQ  H+ + Y+RLG
Sbjct: 293 EKEAKEPLQPHHIRQAYLRLG 313


>Z82283-3|CAB05283.1|  485|Caenorhabditis elegans Hypothetical
           protein T23G4.3 protein.
          Length = 485

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 10  VICFIVRGHKIIVYLSK 60
           ++ F++RGHK+ VYL K
Sbjct: 289 ILLFLIRGHKVKVYLPK 305


>U23511-7|AAC46795.1|  435|Caenorhabditis elegans Hypothetical
           protein C32D5.7 protein.
          Length = 435

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 269 TVCSFVFLATVILICYSGIGNCLFWTQ 349
           ++C+F+ +AT  L+C+ G+     WTQ
Sbjct: 203 SICAFIGVATFQLMCFFGLTISEKWTQ 229


>U21324-6|AAA62562.1|  287|Caenorhabditis elegans Hypothetical
           protein C35D10.6 protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 336 CSGLSVMERNTTPKHE*NKFRV 401
           C G+SV+ R T P+H    F+V
Sbjct: 236 CQGISVLPRTTNPEHVATNFKV 257


>L14324-7|AAA28181.2|  565|Caenorhabditis elegans Prolyl carboxy
           peptidase like protein1 protein.
          Length = 565

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 263 PCTVCSFVFLATVILICYSGIGNCLFWTQCDGEKYDT 373
           P   CS + +A    +C SG  N +FW +C  + Y T
Sbjct: 373 PWQECSEIIMA----MCASGGSNDVFWNECGKDIYQT 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,274,004
Number of Sequences: 27780
Number of extensions: 320762
Number of successful extensions: 697
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)