Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M14
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   3.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   6.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   6.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.6  

>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 567 NPYEPSYKFINSYNRKNTIYLQKIF 493
           NP   +Y + N+YN  N     K++
Sbjct: 86  NPLSNNYNYNNNYNNYNKHNYNKLY 110


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 412 TVGCTRNLFHSCLGVVFLSI 353
           T+  T NL   C+G+ FLS+
Sbjct: 236 TLFYTVNLIIPCVGISFLSV 255


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 201 SAGFTGFGIRST 166
           S+ +TGFGI+ST
Sbjct: 378 SSTYTGFGIQST 389


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 489 FKKSFVNKLYFSCCN 533
           F+K F   LYF C N
Sbjct: 434 FRKPFREILYFRCSN 448


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,160
Number of Sequences: 438
Number of extensions: 4529
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)