Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M13
         (505 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q30CS5 Cluster: LipMt; n=1; Streptomyces aureofaciens|R...    33   4.8  
UniRef50_Q7VRF1 Cluster: Exonuclease V, subunit; n=2; Candidatus...    32   8.5  

>UniRef50_Q30CS5 Cluster: LipMt; n=1; Streptomyces aureofaciens|Rep:
           LipMt - Streptomyces aureofaciens
          Length = 341

 Score = 32.7 bits (71), Expect = 4.8
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 392 LVDQFSERSPSTLAYVLQMSGGIYAYIFTQVSYT 493
           L DQ  +  P ++ + + +SGG+YA  FT V++T
Sbjct: 77  LSDQLRDDHPQSMRHYVMLSGGLYADTFTAVTHT 110


>UniRef50_Q7VRF1 Cluster: Exonuclease V, subunit; n=2; Candidatus
            Blochmannia|Rep: Exonuclease V, subunit - Blochmannia
            floridanus
          Length = 1139

 Score = 31.9 bits (69), Expect = 8.5
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +2

Query: 68   SIVL*LDLKT*RENIVRFYFSYKTFHLFYKCL*SNKIIVEHNTFFVYKISKKRKSLRVIS 247
            S +L  DL     + VR +F  +    FY+C  ++ I++   TFFV  + + + ++++I 
Sbjct: 840  STILLRDLYDFYRHPVRMWFQKRLKVYFYQC--THDILLNDETFFVSNLRRFQLNVKLID 897

Query: 248  YF 253
            YF
Sbjct: 898  YF 899


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 466,380,916
Number of Sequences: 1657284
Number of extensions: 8443507
Number of successful extensions: 17308
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17304
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30110042232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)