Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M13
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    25   4.9  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    25   6.5  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   6.5  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   8.5  

>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 20/52 (38%), Positives = 23/52 (44%)
 Frame = -3

Query: 215 KSYRRRRYYVPLLFYCSINIYRISGMFCKKNRIGRYSHVTFLSLITKRYFGI 60
           K Y     YVP L      I RIS +  K N I    H+TFL +     FGI
Sbjct: 280 KEYTTICDYVPTLSKQLAPIRRISALDLK-NLIETSPHITFLDVREPVQFGI 330


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 257 K*NKKLLSKISAF*KSYRRRRYYVPLLFYCSINIYRISGM 138
           K  +KLL KI  F  SY    Y++  L   SIN   +SGM
Sbjct: 19  KVEQKLLIKIDWFILSYCCVSYFINYLDRSSINNAYLSGM 58


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 146 LFYKCL*SNKIIVEHNTFFVYKISKKRKSLRVISYFTSLYIVNVP 280
           L  K L +NK  V +N F +Y+  +    +R    F S  ++N+P
Sbjct: 261 LVVKRLRANKQGVGNNHFKLYQFKETMLDIRTWIMFVSSVLLNIP 305


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 179  IVEHNTFFVYKISKKRKSLRVISYFTSLYIVNV 277
            IV  N  F++ +  KRK+L  +  FTS  I ++
Sbjct: 1549 IVYANLKFLWAVDDKRKALNSMQEFTSQLISDI 1581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,819
Number of Sequences: 5004
Number of extensions: 39753
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)