Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M13
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AC025726-11|AAY43987.1|  294|Caenorhabditis elegans Hypothetical...    28   3.3  
U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical p...    28   4.4  
AF078157-12|AAG24073.1|  338|Caenorhabditis elegans Hypothetical...    27   7.7  

>U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical
           protein B0244.6 protein.
          Length = 982

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 391 IGRSVQRTFAFYVSLCVADVRRYLCLYLYTSILYV 495
           +  S Q+ + F VS CV+ +   L L +   ILYV
Sbjct: 674 MSHSTQKRYVFVVSRCVSSISAALTLLILRCILYV 708


>AC025726-11|AAY43987.1|  294|Caenorhabditis elegans Hypothetical
           protein Y71G12B.31 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 206 RRRRYYVPLLFYCSINIYRISGMFCKKNRIGRYSHVTFLSLITK 75
           R R+Y  P++ +CS  I R     C  N I R+     + + ++
Sbjct: 215 RGRQYTSPIVVHCSAGIGRTGVFICTDNVISRFESEGIIDIFSE 258


>U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical
            protein C06A5.1 protein.
          Length = 1932

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 197  RYYVPLLFYCSINIYRISGMFCKKNRIGRYSHV 99
            +YY  L   CSI ++R+   +CKK  +  YS +
Sbjct: 1516 KYYTQL---CSIFVFRLISAYCKKYPLASYSEM 1545


>AF078157-12|AAG24073.1|  338|Caenorhabditis elegans Hypothetical
           protein F25E5.2 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 250 IRNYSQRFPLFRNLIDEEGIMFHY 179
           IRN    F LFRNL + + I+F Y
Sbjct: 313 IRNNEDLFRLFRNLYEHDYILFGY 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,987,314
Number of Sequences: 27780
Number of extensions: 211567
Number of successful extensions: 497
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)