Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M11
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    25   5.8  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.7  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    25   7.7  

>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +2

Query: 251 CEVCVKTVEKFAATLSDDVKKEPKLIEVEFKKFCKTSKNKEHRFCYY 391
           C+VC K++++    +   +KK PK++ +  K+F      + H   +Y
Sbjct: 291 CDVC-KSLQEAEKRMK--IKKLPKILSLHLKRFKYNETQEGHDKLFY 334


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 336 STSINFGSFFTSSDSVAANFSTVFTQTSQSPSFN 235
           STS    S  +SS S  +  ST+ + +S S SF+
Sbjct: 285 STSSTISSSSSSSSSPTSTSSTISSSSSSSSSFS 318


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 307 EKRAKINRGRVQEVLQNLKE 366
           EKR+++NR R+ E+  +L E
Sbjct: 258 EKRSRVNRNRINELNNSLGE 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,735,147
Number of Sequences: 5004
Number of extensions: 31486
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)