Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M11
         (471 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0094 + 6562212-6563399                                           29   1.9  
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968...    29   2.5  
04_01_0316 + 4251465-4251590,4251664-4251719,4252973-4253087,425...    28   3.3  

>05_02_0094 + 6562212-6563399
          Length = 395

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -1

Query: 429 LRIPVADSSSPPK**QNLCSLFFEVLQNFLNSTSINFGSFFTS 301
           +R  VADS S      N C LF E+LQ  +  T + FG+  T+
Sbjct: 90  MRAAVADSGSV----DNACLLFDEMLQRGIAPTVVTFGTLVTA 128


>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
            14397510-14397609
          Length = 2033

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
 Frame = +2

Query: 194  HLLFIAATIQVALSLKEGDCEV----CVKTVEKFAATLSDDVKKEPKLIEVEFKKFCKTS 361
            + +++   +   L+L E D  +    C +   +  + ++   +K+ +L+E E K      
Sbjct: 1442 YFIYLIEILSAQLALSEFDLNINKSICQELASELESCMAQLSQKDDELLEAEDKVHLLQG 1501

Query: 362  KNKEHRFCYYLGGLE---ESATGILSELSKPLS 451
            KN+E   C  +G L+   E A  +  EL K ++
Sbjct: 1502 KNRE--LCGVVGSLQVAIEGAKIVKEELEKKIT 1532


>04_01_0316 +
           4251465-4251590,4251664-4251719,4252973-4253087,
           4253174-4253417,4254189-4254325,4255006-4255065,
           4255336-4255460,4256021-4256048,4256267-4256336,
           4256513-4256565,4256966-4257025,4257498-4257544,
           4257617-4257741,4258572-4258686,4258778-4258826,
           4260415-4260471,4261126-4261209,4261363-4261442,
           4262005-4262094,4262252-4262375
          Length = 614

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
 Frame = +2

Query: 167 FKMYRLSMFHLLFIAATIQVALSLKEGDCEVCVKTVEKFAATLSDDVKKEPKLIEVEFKK 346
           F +YRL + ++LF     Q++   ++  C  C+     F   +S+D +     ++ +  +
Sbjct: 299 FFLYRLRVGNVLFNYKNTQMSEVTEDFTCPFCLVRCGNFK--ISEDYQAVNVTLKKDNMR 356

Query: 347 --FCKTSKNKEHRFCYYLGGLEESATGIL 427
             F     +  HR  YY    ++S T IL
Sbjct: 357 TEFVAAEVDNSHRIFYYRSRFKKSRTEIL 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,678,528
Number of Sequences: 37544
Number of extensions: 176172
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)