Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M09
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    27   2.2  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    25   6.6  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.6  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   6.6  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    25   6.6  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    25   6.6  

>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 477 VWVIAFVWVLAHRAQLTVLAL 415
           +WV + +W  AHRA L  LAL
Sbjct: 79  IWVTSKLWCNAHRAGLVPLAL 99


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +2

Query: 92  TS*YSKSTEPMKNLTHLSGAKQLSSFTKTYRLTIWISLKA*DPVTPESTETLDTM 256
           T+    S+ P+++    SG   L SFT  +  +        DP+  E+ +TLD++
Sbjct: 324 TTLIESSSSPLRSGPSTSGL--LDSFTSAFHTSGSSKFSEQDPILIEAKDTLDSL 376


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 14/60 (23%), Positives = 26/60 (43%)
 Frame = +1

Query: 34  DLVPVDPEDMYVASKIPNRDFVVFQEYRTDEEPDAPFRCEAVIVVHKDLPINNLDQLKGL 213
           DL P+D +    +  + N   V+     TDE    P   E  + V   + +++ D + G+
Sbjct: 100 DLHPLDNDSTRTSKTLKNSSEVLTASKLTDEGNSKPLLEEGEVAVSSPILLDSKDVIMGV 159


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 146 RKGASGSSSVLYSWNTTKSRLGIFEATYISSGSTGTKSA 30
           +   SGSSS   S +TT S   +   + ISSGS+   ++
Sbjct: 424 QSSTSGSSSGSSSASTTASSSSVSSGSSISSGSSSMSTS 462


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 8/12 (66%), Positives = 12/12 (100%)
 Frame = +3

Query: 213 KILSHRSQQKRW 248
           KI+SH++Q+KRW
Sbjct: 361 KIVSHKNQRKRW 372


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 140 GASGSSSVLYSWNTTKSRL 84
           G S SS ++YSWN  +  L
Sbjct: 115 GCSNSSCIVYSWNAEQRNL 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,319
Number of Sequences: 5004
Number of extensions: 43613
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)