Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M09
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0305 - 29097478-29097598,29097766-29097866,29098136-290982...    33   0.18 
10_02_0189 - 6486737-6486916,6486988-6487260,6487364-6487576,648...    27   6.6  
11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973...    27   8.8  
09_02_0530 + 10285844-10287217                                         27   8.8  

>05_07_0305 -
           29097478-29097598,29097766-29097866,29098136-29098288,
           29098404-29098542,29098649-29098719,29099022-29099333,
           29099605-29099903,29100011-29100271,29100365-29100471,
           29100588-29100739,29100816-29100970,29102946-29103141,
           29103340-29103468,29103540-29103641,29103736-29103889,
           29103970-29104058
          Length = 846

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +1

Query: 223 HTGVNRNVGYNVPLTILMKRAVFPKMNDHSISPKENELRALSSFFSKSCIVGKWSPD 393
           H G++R+   N+P+ +L    VF      S+  K NE  +    F      G++ PD
Sbjct: 523 HCGMSRDFLNNIPVAVLTNEFVFSSKEVESLRAKSNESTSSLDHFDAEVEEGEFIPD 579


>10_02_0189 -
           6486737-6486916,6486988-6487260,6487364-6487576,
           6489081-6489206
          Length = 263

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 292 GRPLSSLKSLMGHCIQRFC*LRC 224
           G+P+  L  L G C++ FC + C
Sbjct: 137 GQPIHQLDQLCGQCLRSFCGVSC 159


>11_06_0047 +
           19595904-19596185,19596284-19596424,19597195-19597307,
           19597970-19598049,19598557-19598720,19598931-19599060,
           19599155-19599254,19599452-19599500,19599775-19599849,
           19600026-19600124,19600745-19600823,19600897-19601045,
           19601334-19601393,19601490-19601684
          Length = 571

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 403 NSAWKGQYSQLCSMCQ 450
           +SAW G +SQLC  C+
Sbjct: 363 SSAWTGNWSQLCPTCK 378


>09_02_0530 + 10285844-10287217
          Length = 457

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +1

Query: 271 LMKRAVFPKMNDHSISPKENELRALSSFFSKSCIVGKWSPDPKTNSAWKGQYSQLCS 441
           L+ R +  ++ D+++SP   + R L +  S + +  +  P PK   A  G    LC+
Sbjct: 81  LLGRFLVGRLEDYTVSPASADFRRLLAQLSSAGLFERVGPTPKVQVA--GMLLLLCA 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,196,587
Number of Sequences: 37544
Number of extensions: 286096
Number of successful extensions: 704
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)