Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M09
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41535-6|AAK67248.1|  482|Caenorhabditis elegans Lin-26 related ...    28   3.4  
U41535-5|AAK67252.1|  548|Caenorhabditis elegans Lin-26 related ...    28   3.4  
AJ130960-1|CAA10264.1|  482|Caenorhabditis elegans LIR-2B protei...    28   3.4  
AJ130959-1|CAA10263.1|  548|Caenorhabditis elegans LIR-2A protei...    28   3.4  
Z68296-2|CAA92592.1|  297|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U39849-2|AAN63462.2|  370|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>U41535-6|AAK67248.1|  482|Caenorhabditis elegans Lin-26 related
           protein 2, isoform b protein.
          Length = 482

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
 Frame = +1

Query: 76  KIPNRDFVVFQEYRTDEEPD------APFRCEAVIVVHKDLPINNLDQLKGLRSCHTGVN 237
           + P  D V +  Y  + E D       PF    +   +K+LP++ + QL    S  + V 
Sbjct: 258 RAPRLDTVEYSNYEHEPETDEISRDGTPFWSTPIPPTNKELPVSPVSQLDMTNSIKSRVE 317

Query: 238 RNVGYNVPLTILM-KRAVFPKMNDHSISPKENELRALSSFFSKSCIVGKWSPDPK 399
           R V   V L     +   F +  D   +  E +L A  +  +   + GK SP PK
Sbjct: 318 R-VDVEVKLEPCNDEDDEFSEEVDEQTAELEEQL-ATEAIRTGLALFGKVSPSPK 370


>U41535-5|AAK67252.1|  548|Caenorhabditis elegans Lin-26 related
           protein 2, isoform a protein.
          Length = 548

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
 Frame = +1

Query: 76  KIPNRDFVVFQEYRTDEEPD------APFRCEAVIVVHKDLPINNLDQLKGLRSCHTGVN 237
           + P  D V +  Y  + E D       PF    +   +K+LP++ + QL    S  + V 
Sbjct: 324 RAPRLDTVEYSNYEHEPETDEISRDGTPFWSTPIPPTNKELPVSPVSQLDMTNSIKSRVE 383

Query: 238 RNVGYNVPLTILM-KRAVFPKMNDHSISPKENELRALSSFFSKSCIVGKWSPDPK 399
           R V   V L     +   F +  D   +  E +L A  +  +   + GK SP PK
Sbjct: 384 R-VDVEVKLEPCNDEDDEFSEEVDEQTAELEEQL-ATEAIRTGLALFGKVSPSPK 436


>AJ130960-1|CAA10264.1|  482|Caenorhabditis elegans LIR-2B protein
           protein.
          Length = 482

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
 Frame = +1

Query: 76  KIPNRDFVVFQEYRTDEEPD------APFRCEAVIVVHKDLPINNLDQLKGLRSCHTGVN 237
           + P  D V +  Y  + E D       PF    +   +K+LP++ + QL    S  + V 
Sbjct: 258 RAPRLDTVEYSNYEHEPETDEISRDGTPFWSTPIPPTNKELPVSPVSQLDMTNSIKSRVE 317

Query: 238 RNVGYNVPLTILM-KRAVFPKMNDHSISPKENELRALSSFFSKSCIVGKWSPDPK 399
           R V   V L     +   F +  D   +  E +L A  +  +   + GK SP PK
Sbjct: 318 R-VDVEVKLEPCNDEDDEFSEEVDEQTAELEEQL-ATEAIRTGLALFGKVSPSPK 370


>AJ130959-1|CAA10263.1|  548|Caenorhabditis elegans LIR-2A protein
           protein.
          Length = 548

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
 Frame = +1

Query: 76  KIPNRDFVVFQEYRTDEEPD------APFRCEAVIVVHKDLPINNLDQLKGLRSCHTGVN 237
           + P  D V +  Y  + E D       PF    +   +K+LP++ + QL    S  + V 
Sbjct: 324 RAPRLDTVEYSNYEHEPETDEISRDGTPFWSTPIPPTNKELPVSPVSQLDMTNSIKSRVE 383

Query: 238 RNVGYNVPLTILM-KRAVFPKMNDHSISPKENELRALSSFFSKSCIVGKWSPDPK 399
           R V   V L     +   F +  D   +  E +L A  +  +   + GK SP PK
Sbjct: 384 R-VDVEVKLEPCNDEDDEFSEEVDEQTAELEEQL-ATEAIRTGLALFGKVSPSPK 436


>Z68296-2|CAA92592.1|  297|Caenorhabditis elegans Hypothetical
           protein C46C2.3 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 159 NCFAPERCVRFFIGSVLLEYYEVSIGYLRSN 67
           +CF+P+R V F I     E+   SIG +  N
Sbjct: 9   DCFSPDRIVVFVIPEENFEHISESIGIITQN 39


>U39849-2|AAN63462.2|  370|Caenorhabditis elegans Hypothetical
           protein C06A8.8a protein.
          Length = 370

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 160 IVVHKDLPINNLDQLKGLRSCHTGVNRNVGYNVPLTI 270
           ++VHKD P ++L    G+ S H   +R   YN   ++
Sbjct: 59  LIVHKDYPPSSLTVSLGIPSNHFRNSRGKSYNADYSV 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,946,488
Number of Sequences: 27780
Number of extensions: 244312
Number of successful extensions: 820
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)