Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_M08
(332 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0331 - 21057957-21058205,21059213-21059791 29 1.2
01_01_0042 + 317586-317640,318128-318185,318799-319236,320426-32... 28 1.6
11_01_0364 - 2790450-2790464,2790601-2791116 28 2.1
11_03_0226 - 11908455-11908562,11915971-11916240,11916463-119169... 27 3.7
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257... 27 3.7
07_03_0781 - 21477797-21478549 27 4.9
07_03_0538 + 19231318-19231382,19231652-19232390,19232468-192325... 27 4.9
01_06_1329 + 36354340-36354493,36355781-36355942,36356279-363564... 27 4.9
01_01_1237 - 10047417-10047934,10048899-10049136 26 6.4
12_02_1250 - 27337435-27338817 26 8.5
03_06_0083 - 31532213-31532775,31534016-31534043 26 8.5
>01_05_0331 - 21057957-21058205,21059213-21059791
Length = 275
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 130 EEKSWYDSLKKPSWTPPKWVFGP 198
+E W D++ PS PP +FGP
Sbjct: 157 QESDWMDTVIDPSHVPPSILFGP 179
>01_01_0042 +
317586-317640,318128-318185,318799-319236,320426-320467,
320468-320648,320838-320867
Length = 267
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 216 QWNGYRLLSGVGGMWRIYLMRQFYLLAYTVGKLLLN 323
+W G ++ + + R+YL++ FY++ Y +G LLN
Sbjct: 104 RWIGTLAVAAIYAL-RVYLVQGFYIVTYGLGIYLLN 138
>11_01_0364 - 2790450-2790464,2790601-2791116
Length = 176
Score = 27.9 bits (59), Expect = 2.1
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2
Query: 215 TVEWVSPPIWCG 250
T +W++PP WCG
Sbjct: 134 TTQWLAPPAWCG 145
>11_03_0226 -
11908455-11908562,11915971-11916240,11916463-11916946,
11917148-11918060,11918628-11919300
Length = 815
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -1
Query: 179 GGVQLGFFNESYQDFSSPFRIWPAKYSPLTQPPTFG 72
G +Q+G + + FS+P + + ++S +P TFG
Sbjct: 31 GSIQVGMKGKVARSFSAPSKGFREEFSGAAKPKTFG 66
>01_01_0320 -
2578911-2579144,2579243-2579455,2579580-2579858,
2579961-2580050,2580258-2580439,2581366-2582470
Length = 700
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 139 SWYDSLKKPSWTPPK 183
SW + +KKPSW P K
Sbjct: 600 SWQEEIKKPSWHPYK 614
>07_03_0781 - 21477797-21478549
Length = 250
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 197 GPNTHLGGVQLGFFNESYQDFSSPFRIWPAK 105
G +THL V++G + Q+ P +WP +
Sbjct: 193 GSDTHLLAVRIGRKGKILQELRGPKNVWPTE 223
>07_03_0538 +
19231318-19231382,19231652-19232390,19232468-19232516,
19232600-19232664,19232774-19232828,19234107-19234225,
19234346-19234412,19235316-19235437,19235521-19235790
Length = 516
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 161 NPAGHLLNGCLDQPGRVFTVEW-VSPPIWCGRN-VADLPDEAVL 286
NP G+ ++G DQ ++F EW + W RN V + P VL
Sbjct: 190 NPPGNDVHGIADQLNKIFDSEWKLLERKWKDRNLVQEQPSLKVL 233
>01_06_1329 +
36354340-36354493,36355781-36355942,36356279-36356457,
36356719-36356918,36356938-36357014,36357110-36357111,
36357594-36357701,36357806-36358024,36358167-36358448
Length = 460
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 26 KISLWRTGKPLVL*SYQTLVVGLTGCTLRARSGR-VKRNL 142
KISLW G P++ Y + L C + + GR + RN+
Sbjct: 190 KISLWEYGLPVMDSDYLFVSALLFNCCIHIQGGRTIMRNI 229
>01_01_1237 - 10047417-10047934,10048899-10049136
Length = 251
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1
Query: 127 GEEKSWYDSLKKPSWTPPKWVFG 195
G++K WYD L P +W G
Sbjct: 48 GDDKGWYDGLTHPGVDYQEWADG 70
>12_02_1250 - 27337435-27338817
Length = 460
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 194 DQPGRVFTVEWVSPPI 241
DQ GR TV WV+P +
Sbjct: 64 DQTGRAMTVSWVTPKL 79
>03_06_0083 - 31532213-31532775,31534016-31534043
Length = 196
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 242 WCGRNVADLPDEAVLPLSLYGGQTAPELGL 331
WCGR A L + + + + G AP+LG+
Sbjct: 40 WCGRRTAYLTNGSGVAEARTAGSGAPKLGM 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,296,346
Number of Sequences: 37544
Number of extensions: 298142
Number of successful extensions: 788
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -