Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_M08
(332 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 29 0.020
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 22 2.2
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 3.0
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 3.0
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 20 6.8
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 20 6.8
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 20 6.8
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 20 6.8
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 20 6.8
AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength rhodo... 20 6.8
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 20 6.8
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 28.7 bits (61), Expect = 0.020
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 200 AGPNTHLGGVQLGFFNESYQDFSSPFRIWPAKYSPLTQP 84
+GP GGV+LG+FN+S +S +P S P
Sbjct: 55 SGPEESSGGVELGWFNDSAAAITSTSPSYPGGGSSSPSP 93
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 21.8 bits (44), Expect = 2.2
Identities = 9/33 (27%), Positives = 13/33 (39%)
Frame = +1
Query: 169 WTPPKWVFGPAWTGLYSGMGIASYLVWEECGGF 267
W ++ AW Y M + S L W C +
Sbjct: 72 WMNVYYIVILAWAIFYFFMSMRSELPWGSCNNY 104
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.4 bits (43), Expect = 3.0
Identities = 9/31 (29%), Positives = 13/31 (41%)
Frame = +1
Query: 169 WTPPKWVFGPAWTGLYSGMGIASYLVWEECG 261
WT ++ AW Y + + L W CG
Sbjct: 110 WTNIYYIIILAWALFYLLVSLRIDLPWRTCG 140
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.4 bits (43), Expect = 3.0
Identities = 9/31 (29%), Positives = 13/31 (41%)
Frame = +1
Query: 169 WTPPKWVFGPAWTGLYSGMGIASYLVWEECG 261
WT ++ AW Y + + L W CG
Sbjct: 163 WTNIYYIIILAWALFYLLVSLRIDLPWRTCG 193
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 20.2 bits (40), Expect = 6.8
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = +1
Query: 184 WVFGPAWTGLYSGMG 228
WV GP + +Y+ +G
Sbjct: 118 WVLGPLFCQIYAMLG 132
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 20.2 bits (40), Expect = 6.8
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = +2
Query: 212 FTVEWVSPPIWCG 250
F E + PP+W G
Sbjct: 218 FDTEGLLPPVWVG 230
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 20.2 bits (40), Expect = 6.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 290 EVKLPHQVNPPHSSHTR 240
EVK P +PP SH+R
Sbjct: 463 EVKSPVLRSPPAFSHSR 479
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 20.2 bits (40), Expect = 6.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 290 EVKLPHQVNPPHSSHTR 240
EVK P +PP SH+R
Sbjct: 463 EVKSPVLRSPPAFSHSR 479
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 20.2 bits (40), Expect = 6.8
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +3
Query: 285 YLLAYTVGKLLLNWAW 332
+LLA V L++W W
Sbjct: 163 FLLAGIVQPFLIHWIW 178
>AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength
rhodopsin protein.
Length = 152
Score = 20.2 bits (40), Expect = 6.8
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = +1
Query: 184 WVFGPAWTGLYSGMG 228
WV GP + +Y+ +G
Sbjct: 84 WVLGPLFCQIYAMLG 98
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 20.2 bits (40), Expect = 6.8
Identities = 6/24 (25%), Positives = 10/24 (41%)
Frame = +2
Query: 188 CLDQPGRVFTVEWVSPPIWCGRNV 259
C + + W+SPP+ V
Sbjct: 1090 CTTLTSQTIRISWMSPPLSAANGV 1113
Score = 19.8 bits (39), Expect = 9.1
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -3
Query: 285 KTASSGKSATFLPHQIGGDTHSTVKT 208
+ SGK + + +GG++ TV T
Sbjct: 278 RVEDSGKYLCIVNNSVGGESVETVLT 303
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,718
Number of Sequences: 438
Number of extensions: 2893
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 7466580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
- SilkBase 1999-2023 -