Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M07
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0645 + 21475126-21475293,21475386-21475538,21478101-214782...    28   4.8  
03_05_0273 - 22618177-22618370,22618441-22618531                       27   6.3  
04_03_1008 + 21691299-21691413,21691524-21691863,21692344-216924...    27   8.4  

>12_02_0645 +
           21475126-21475293,21475386-21475538,21478101-21478249,
           21478449-21478526,21478604-21478697,21478920-21478994,
           21479341-21479637,21479722-21479789,21479876-21479930,
           21480137-21480275,21480439-21480623,21480748-21481119
          Length = 610

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -3

Query: 343 LRSRLPLPEGFVRILIHFRQVGLFNWS 263
           LRS + LPE  +RI+ H R++G+F+ S
Sbjct: 209 LRSNIQLPE-CLRIVAHLRRIGVFSES 234


>03_05_0273 - 22618177-22618370,22618441-22618531
          Length = 94

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 404 TRNLLLIKM*FPGGVRGLTWPSQPAAAAGGFCSYSDPLQAGR 279
           TR   L+ +     V   +WP QP  AA GFC     ++ GR
Sbjct: 3   TRRAALLMLLLLVVVAAASWP-QPCDAASGFCGSKCAVRCGR 43


>04_03_1008 +
           21691299-21691413,21691524-21691863,21692344-21692425,
           21692905-21693060,21694171-21694344,21694485-21694556,
           21695289-21695360,21695473-21695591,21695692-21695777,
           21695867-21695919,21696058-21696150
          Length = 453

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 49  GRSHFLLRVGWRCALVIASGGSLHT 123
           G    L+  GWR  + ++S GSL+T
Sbjct: 232 GEKMVLIACGWRHTITVSSSGSLYT 256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,432,273
Number of Sequences: 37544
Number of extensions: 242928
Number of successful extensions: 794
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)