Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M07
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL022716-2|CAA18772.1|  373|Caenorhabditis elegans Hypothetical ...    33   0.087
AL022716-1|CAA18770.1|  371|Caenorhabditis elegans Hypothetical ...    33   0.087
AF025458-5|AAB70974.1|  298|Caenorhabditis elegans Squat protein...    32   0.20 
U97193-5|AAV34804.1|  783|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resis...    29   1.9  
U14635-8|AAK84492.1|  307|Caenorhabditis elegans Collagen protei...    28   3.3  
L15418-1|AAA17445.1|  307|Caenorhabditis elegans col-36 collagen...    28   3.3  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    28   4.3  

>AL022716-2|CAA18772.1|  373|Caenorhabditis elegans Hypothetical
           protein C24F3.1b protein.
          Length = 373

 Score = 33.5 bits (73), Expect = 0.087
 Identities = 21/64 (32%), Positives = 40/64 (62%), Gaps = 12/64 (18%)
 Frame = +2

Query: 5   NGSIFVVVRLCSLVLGVLTFYFGLAGA-APL-----------LLRVAALSILVSFQVYMM 148
           NGS FV+VRL S+++ V+TF++GL  A +P            ++R+  L  +V  Q++++
Sbjct: 267 NGS-FVLVRLGSIIIAVMTFWYGLRQAESPFVDISAGNFNTAVIRLNVLLAVVLLQLFLL 325

Query: 149 FNFI 160
           ++F+
Sbjct: 326 YSFV 329


>AL022716-1|CAA18770.1|  371|Caenorhabditis elegans Hypothetical
           protein C24F3.1a protein.
          Length = 371

 Score = 33.5 bits (73), Expect = 0.087
 Identities = 21/64 (32%), Positives = 40/64 (62%), Gaps = 12/64 (18%)
 Frame = +2

Query: 5   NGSIFVVVRLCSLVLGVLTFYFGLAGA-APL-----------LLRVAALSILVSFQVYMM 148
           NGS FV+VRL S+++ V+TF++GL  A +P            ++R+  L  +V  Q++++
Sbjct: 265 NGS-FVLVRLGSIIIAVMTFWYGLRQAESPFVDISAGNFNTAVIRLNVLLAVVLLQLFLL 323

Query: 149 FNFI 160
           ++F+
Sbjct: 324 YSFV 327


>AF025458-5|AAB70974.1|  298|Caenorhabditis elegans Squat protein 2
           protein.
          Length = 298

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +1

Query: 295 GSEYEQNPPAAAAGCEGQVRPRTPPG 372
           G E  Q PP    GCE    PRTPPG
Sbjct: 272 GPEGPQGPPGEPGGCEHCPIPRTPPG 297


>U97193-5|AAV34804.1|  783|Caenorhabditis elegans Hypothetical
           protein C06A5.3b protein.
          Length = 783

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 7/41 (17%)
 Frame = +1

Query: 274 RVRPA*SG-SEYEQNPPAAAAG------CEGQVRPRTPPGN 375
           R RP   G S+ E+ PP +A+G      C GQVRP+   GN
Sbjct: 478 RARPKHYGYSKVEKTPPISASGHRHCVNCNGQVRPQMCGGN 518


>U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 6 protein.
          Length = 1396

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 40  SGPGRSHFLLRVGWRCALVIASGGSLHTCL 129
           SGP R+HFL+ V W C  V     ++  CL
Sbjct: 83  SGPKRTHFLVGV-WHCTKVSVMAHAISLCL 111


>U14635-8|AAK84492.1|  307|Caenorhabditis elegans Collagen protein
           36 protein.
          Length = 307

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 295 GSEYEQNPPAAAAGCEGQVRPRTPPG 372
           G +  Q PP     C+    PRTPPG
Sbjct: 281 GPQGPQGPPGDEGSCDHCPEPRTPPG 306


>L15418-1|AAA17445.1|  307|Caenorhabditis elegans col-36 collagen
           protein.
          Length = 307

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 295 GSEYEQNPPAAAAGCEGQVRPRTPPG 372
           G +  Q PP     C+    PRTPPG
Sbjct: 281 GPQGPQGPPGDEGSCDHCPEPRTPPG 306


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +3

Query: 18  LLLCVYALWSWAFSLSTSGWLALRPCYCEWRLSPYLSLSRFT*CSTSYRKLSSRD 182
           L +C++    W    + +GWL L  C   W+ + + S  R       + KL+ ++
Sbjct: 208 LYVCLFNSVVWLLPSAIAGWLYLCVCKAVWKSTSFSSSLRNNMKKMEHMKLTEKN 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,113,593
Number of Sequences: 27780
Number of extensions: 186998
Number of successful extensions: 662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)