Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M06
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy...    28   0.53 
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    24   6.5  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    24   8.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    24   8.6  

>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 194

 Score = 27.9 bits (59), Expect = 0.53
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 305 CSGRSSFYCLSLCASAFKAD 364
           C G SSFYCLS+    +K D
Sbjct: 132 CQGYSSFYCLSIFDRYYKPD 151


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 6    PPSRTQLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVK 128
            PPSRT ++  +   K   VN+ +T  K A +  A + +F K
Sbjct: 1118 PPSRTGVEHKEENKKYDNVNIQKTLAKCAEEF-AEHTNFNK 1157


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 39  NLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEE 140
           +L K +  +MD+ SQKLA  + +      +H +E
Sbjct: 268 SLQKLIDASMDKNSQKLARLIFSLLYQITQHEQE 301


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 27   KESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEV 143
            K++    K+ G+N +QTS +  P  ++   D + + ++V
Sbjct: 1583 KKTGKARKDKGINNNQTSPQNKPSKESLKSDTISNEKKV 1621


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,237,418
Number of Sequences: 5004
Number of extensions: 16463
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)