Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M06
         (370 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1692 - 39232475-39232867,39233176-39233310,39233770-392339...    29   1.5  
05_06_0125 - 25828093-25828911,25830398-25830530,25830644-25831062     27   3.5  
05_05_0352 + 24328117-24328303,24328451-24328559,24330634-243306...    27   3.5  
04_03_0147 - 11853940-11854128,11854933-11855013,11855501-118555...    27   4.6  
02_05_1041 - 33713561-33714564,33714844-33714904,33715640-337159...    27   6.1  
07_03_0262 + 15944259-15944514,15945524-15945597,15946320-159464...    26   8.1  
04_03_1031 + 21850857-21851009,21852229-21852350,21852447-218528...    26   8.1  

>01_06_1692 -
           39232475-39232867,39233176-39233310,39233770-39233916,
           39234131-39234303,39235201-39235288,39235508-39235725,
           39235968-39236025,39236259-39236315,39237022-39237099
          Length = 448

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = +3

Query: 3   KPPSRTQLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQKKVHEAATKQ*R 182
           K   ++ L E++++AKE+  N+ +  +  APK +    DF+    E       ++ ++  
Sbjct: 384 KDALKSYLNENESIAKELETNLRKLMETQAPKKQEDEGDFLSDLPEESLATETSSEEELA 443

Query: 183 ALI 191
           A+I
Sbjct: 444 AVI 446


>05_06_0125 - 25828093-25828911,25830398-25830530,25830644-25831062
          Length = 456

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 28  RRARTWRRKSASTWIRPHRNWRQ 96
           RR RTWR +    W R    WR+
Sbjct: 107 RRQRTWRLRQGGCWQRLRWRWRR 129


>05_05_0352 +
           24328117-24328303,24328451-24328559,24330634-24330692,
           24331139-24331220,24331361-24331481,24331751-24332278,
           24332724-24332831,24332934-24333131,24334043-24334234,
           24336116-24336199,24336385-24336525,24336683-24336748,
           24336880-24337047,24337134-24337463,24337568-24337666
          Length = 823

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 105 AAYDDFVKHAEEVQKKVHEAATKQ*RALIARR 200
           A Y D  K+ EE+Q  + E   +Q  AL+ +R
Sbjct: 175 ALYPDIDKYEEEIQASIAETFRRQSEALVKKR 206


>04_03_0147 -
           11853940-11854128,11854933-11855013,11855501-11855584,
           11855663-11855735,11855888-11855949,11856246-11856327,
           11857643-11858262
          Length = 396

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 23  AKGEPEPGEGSRRQHGS 73
           A G PEP  G RRQ GS
Sbjct: 137 AGGSPEPARGPRRQRGS 153


>02_05_1041 -
           33713561-33714564,33714844-33714904,33715640-33715951,
           33716780-33716917
          Length = 504

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 8   AIQNTAKGEPEPGEGSRRQHGSDLTETGAKTESGI 112
           +I   A    E GEGS    GSD +E G + +  +
Sbjct: 241 SISEYADESDEDGEGSSSDEGSDFSEDGDQEDESV 275


>07_03_0262 +
           15944259-15944514,15945524-15945597,15946320-15946400,
           15946621-15946713,15946946-15947014,15947578-15947697,
           15948342-15948413,15948624-15948701,15949463-15949654
          Length = 344

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 44  GEGSRRQHGSDLTETGAKTESG 109
           G GS  +HG+    TG K+ SG
Sbjct: 20  GSGSEAEHGNPREHTGGKSNSG 41


>04_03_1031 +
           21850857-21851009,21852229-21852350,21852447-21852891,
           21852981-21853087,21853192-21854524,21854632-21854859,
           21854951-21855181,21855278-21855537,21855651-21856113
          Length = 1113

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 15  RTQLKES--QNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQKKV 155
           R QL+E     L K      +   Q+++P+  +A+ D++KHAE +  K+
Sbjct: 227 RRQLQEQLESKLQKAKRQRAEYLKQRVSPR-SSAHADYIKHAEFLSTKL 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,542,603
Number of Sequences: 37544
Number of extensions: 117253
Number of successful extensions: 399
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)