Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M03
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    29   0.35 
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   2.4  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   5.6  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   7.4  
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar...    25   7.4  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    25   7.4  
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ...    24   9.8  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    24   9.8  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    24   9.8  

>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 29.1 bits (62), Expect = 0.35
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -1

Query: 414 IVCKIEELRPSFQASYNAPYRCACHSSGRCDGQVVAFIHAKVRELLA-RCSQFHVQLLNC 238
           +V     LRP  Q ++  PY    ++ G    Q VA ++   + ++A R S  H +L + 
Sbjct: 315 LVTPAGRLRPHGQPNFEVPYTAYIYTRGSITKQPVACLNGFKKPVIAVRFSPIHYELNSF 374

Query: 237 PLESFIVCSF 208
              SF   SF
Sbjct: 375 SNFSFTSVSF 384


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 360 GRYKRLGNLVATLLSYKRFQGIA 428
           G +  LGN+VAT  SY  FQG A
Sbjct: 305 GSFLVLGNVVATKGSYNTFQGEA 327


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 295 QSKGASRTVQSVPRATPELSLGIVHRLQLHHPNSCTDFLNS 173
           + K +S  + SVP A  +  +G+ +   L   N+ ++ LNS
Sbjct: 775 EDKLSSHLLDSVPNALRQAPIGLKNTNNLSERNASSNLLNS 815


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 22  QVKDDKYYTFDPAVFTVKEPFQKCDFLTK--ALERYQFLVRDLHRIT 156
           + ++ K  + DP +FT++E F     L +   +++   L RDL ++T
Sbjct: 683 RARNQKLPSKDPQLFTIEEAFTTVHHLVRLYKVKKPDTLGRDLKQVT 729


>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 256

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 229 FQGTVQELHVELTAPCEKLP 288
           F+GT  E+H+ L A    LP
Sbjct: 150 FEGTAAEMHIALNAVLSSLP 169


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 1   VWPKPQIQVKDDKYYTFDPAVFTVKEPFQKCDFLTKALERYQ 126
           V PKP     D  YY     +  +K   ++ D+L KA E  Q
Sbjct: 519 VTPKPWTSWIDGGYYYSRQPLVRLKGALEQVDYLMKASENGQ 560


>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 246

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 163 FVKRSLGSQYRSLDDEAANDERFQGTVQELHV 258
           F+K   GS  + LDDEA N++   G + + ++
Sbjct: 17  FIKALTGSLPKGLDDEAFNNDH-SGLIHKYNI 47


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 229  IVHRLQLHHPNSCT 188
            I H L LHHP SC+
Sbjct: 1018 IKHVLLLHHPKSCS 1031


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 66  KYSWVKCIIFIVFHLYL 16
           KY W+K ++ +V H +L
Sbjct: 456 KYGWLKAMLILVTHTFL 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,562
Number of Sequences: 5004
Number of extensions: 38704
Number of successful extensions: 111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)