Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_M03
(462 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0319 + 20171486-20171800,20171882-20171956,20172160-201721... 33 0.11
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 33 0.15
07_03_1000 - 23220878-23221821,23222164-23223001 32 0.26
03_02_0187 - 6248226-6249226,6249296-6250148 30 0.79
03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012 30 1.0
03_02_0162 + 6053144-6053365,6053474-6053548,6054477-6054623,605... 27 7.3
10_08_0140 + 15149534-15149729,15149810-15150038,15150118-15150238 27 9.7
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462... 27 9.7
>05_04_0319 +
20171486-20171800,20171882-20171956,20172160-20172195,
20172302-20172413,20173082-20173152,20173287-20173417,
20173718-20173783,20174003-20174103,20174311-20174370,
20174463-20174496,20174852-20174950,20175019-20175078,
20175700-20175874,20175900-20175950,20176603-20176632
Length = 471
Score = 33.1 bits (72), Expect = 0.11
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = +1
Query: 292 FGMDESYNLXXXXX-----XXXXXXXIWGVIRGLETWSQL--FYLTNDFRELRINSTDIY 450
FG+DESYNL ++G + LET+SQL F T+ EL+ I
Sbjct: 108 FGVDESYNLSVPATGSPIYAQIEAQTVFGALHALETFSQLCNFDFTSRLIELQSAPWSIT 167
Query: 451 DYPR 462
D PR
Sbjct: 168 DMPR 171
>05_01_0121 -
833885-833949,834180-834430,834545-834604,834893-834926,
835746-835805,836409-836509,836939-837039,837209-837289,
837580-837650,837738-837849,838138-838173,838865-838951,
839055-839396
Length = 466
Score = 32.7 bits (71), Expect = 0.15
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Frame = +1
Query: 241 VQELHVELTAPCEKLPYFGMDESYNLXXXXX---------XXXXXXXIWGVIRGLETWSQ 393
V +L V + + EKL G+DESY + I+G IRGLET+SQ
Sbjct: 101 VGKLTVVVASADEKLE-LGVDESYTIYVAAAGGVNSIVGGATIEANTIYGAIRGLETFSQ 159
Query: 394 LFYLTNDFRELRINSTDIY--DYPR 462
L D + + + Y D PR
Sbjct: 160 LCVFNYDTKNVEVRHAPWYIEDEPR 184
>07_03_1000 - 23220878-23221821,23222164-23223001
Length = 593
Score = 31.9 bits (69), Expect = 0.26
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +1
Query: 295 GMDESYNLX---XXXXXXXXXXXIWGVIRGLETWSQL 396
G+DESY L WG +RGLET+SQL
Sbjct: 127 GVDESYALEILPAGAAATVTAATAWGAMRGLETFSQL 163
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 30.3 bits (65), Expect = 0.79
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +1
Query: 298 MDESYNLXX---XXXXXXXXXXIWGVIRGLETWSQL 396
+DESY L WG IRGLET+SQL
Sbjct: 130 VDESYTLSVLPDSGSADISAATPWGAIRGLETFSQL 165
>03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012
Length = 890
Score = 29.9 bits (64), Expect = 1.0
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = +1
Query: 7 PKPQIQVKDDKYYTFDPAVFTVKEPFQKCDFLTKALERYQFLVRDLHRITRR--FVKRSL 180
P+P +KY + P +F K+ + L E + + +DL I +R ++
Sbjct: 543 PEPNQDFWKEKYISSLPPLFAEKKKKNEQPDLISLFEDQKIMKQDLEEIRKRLYMLESKE 602
Query: 181 GSQYRSLDDEAANDERFQGTVQE 249
G D+ D+ GT+Q+
Sbjct: 603 GFHMEEKDEPIQEDDHVVGTIQK 625
>03_02_0162 +
6053144-6053365,6053474-6053548,6054477-6054623,
6054749-6055300,6055387-6055622,6055914-6056130
Length = 482
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 142 LHRITRRFVKRSLGSQYRSLDDEAANDERF 231
++R+T+ F+ L YR D EA RF
Sbjct: 383 INRVTKNFMMAELDGAYRGTDREAVEMSRF 412
>10_08_0140 + 15149534-15149729,15149810-15150038,15150118-15150238
Length = 181
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 307 FHPCQSKGASRTVQSVPRATPELSLGIVHRLQ-LHH 203
F P + G + VPR PEL L VH ++ LHH
Sbjct: 25 FFPAAATGDGGEEEQVPRPAPELVL--VHAIEPLHH 58
>08_01_0533 +
4625376-4625709,4625799-4625966,4627428-4627689,
4627787-4627934,4628453-4628496,4628812-4628859,
4629245-4630509,4630741-4630839,4630916-4631097,
4631186-4631246,4631488-4631725,4631818-4631971,
4632042-4632335
Length = 1098
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 241 LSLGIVHRLQLHHPNSCTDFLN 176
L L IV L++ HP+ TDFLN
Sbjct: 279 LLLKIVSGLKISHPHRITDFLN 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,304,936
Number of Sequences: 37544
Number of extensions: 240926
Number of successful extensions: 570
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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