Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_M03
         (462 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50199-3|AAA91263.1|  555|Caenorhabditis elegans Hypothetical pr...    36   0.011
AM748820-1|CAO72174.1|  555|Caenorhabditis elegans hexosaminidas...    36   0.011
Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U50199-3|AAA91263.1|  555|Caenorhabditis elegans Hypothetical
           protein T14F9.3 protein.
          Length = 555

 Score = 36.3 bits (80), Expect = 0.011
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 286 PYFGMDESYNLXXXXXXXXXXX-XIWGVIRGLETWSQLFYLTNDFRELRINSTDIYDYPR 462
           P  G  E Y L             +WG +R +E+ S L +  +  +E +I + +I+D PR
Sbjct: 110 PVHGASEEYLLRVSLTEAVINAQTVWGALRAMESLSHLVFYDHKSQEYQIRTVEIFDKPR 169


>AM748820-1|CAO72174.1|  555|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 555

 Score = 36.3 bits (80), Expect = 0.011
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 286 PYFGMDESYNLXXXXXXXXXXX-XIWGVIRGLETWSQLFYLTNDFRELRINSTDIYDYPR 462
           P  G  E Y L             +WG +R +E+ S L +  +  +E +I + +I+D PR
Sbjct: 110 PVHGASEEYLLRVSLTEAVINAQTVWGALRAMESLSHLVFYDHKSQEYQIRTVEIFDKPR 169


>Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical
           protein B0334.4 protein.
          Length = 210

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 120 VSIPCARFTSYYKEVCQKEFRKSV 191
           VSI C R +S Y++V    F+KS+
Sbjct: 138 VSIDCGRMSSVYEKVLLMGFKKSI 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,665,528
Number of Sequences: 27780
Number of extensions: 214187
Number of successful extensions: 579
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)